Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02920 210 / 6e-64 unknown protein AT1G03340 134 / 3e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027996 [exp] 673 / 0 AT4G02920 254 / 4e-81 unknown protein Lus10008160 [exp] 593 / 0 AT4G02920 209 / 3e-64 unknown protein Lus10029640 [exp] 347 / 4e-117 AT4G02920 250 / 3e-79 unknown protein Lus10042685 [exp] 323 / 4e-108 AT4G02920 233 / 7e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138200 [exp] 330 / 3e-110 AT4G02920 276 / 4e-89 unknown protein Potri.002G215800 [exp] 317 / 2e-105 AT4G02920 290 / 2e-94 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008158 pacid=23173764 polypeptide=Lus10008158 locus=Lus10008158.g ID=Lus10008158.BGIv1.0 annot-version=v1.0 ATGGTGAAGCTTTGTTTGATGGCTTCTCATGGCTGCCTTCCTGGTTCTGAGCTCTTGTTTCAGCAAGAACACCACAGGGTTTTCAAGGATTGGCAACCTT ATCTACCTAACACGCTGGCTGGACAAGAGATCACGAGACCAGTCTCCCTTCATCTGAAGCCGAACGGAATCGAACTCACCAACAACCACTTCCCAACTGT TGGAGAGCCTGTACTTATCAACGTAACAGATGAGTGGACAAATAGAGTTCTCTCCGGGTCTGGGATTTCTGGACAATGCGCCAGACATGACAGAATAATG CAATTCCCCAAATCTCGCCTGAACGAATTAGAACCATTGGGATTGGATCTGTCCGAGGTTTCTGAGCCGATCGACCTTCAATCATTGCAACTGTCAGTCG ATCTGGGACCGCATATGATCAACACGAAGGGAAATTTTGATTCCGTCAACCCTTTAGTAGACTTTCTGGGAGATATGGCTCGCAGTTCGAAAATTACCAT TCAACCGGATGGTCGAGTACTGCTGACTGGCAGCAGCACAGAGATTAAGAACATCATCCCCATTGTTGCTGAGTTTTACCTGGCCAATAGTTCAACCTTG AGGAGAAAACAATTGGCGCTCATCCCCCAATTTAACTGGCACGAGTACAACACCGAGCTTTCTTCATCCAAGGTCGAAAGTGTCGATAGCAGCACTCAAA AGGCCAAGGGGAAGCCATCCCTTAAAAGGAGAAGCAGCAAGAGAAGGAGTACTAAAGAGCGGGATCTCTACACAAGAAACTACTCCCACGCTTGCGAGAG CCTTCTTTCATTGATGATGAACAAGAGACATAGTGGGAAAACGGCGATCCTGTCACTCAAAAAGTCTGGCCCCGAGCTACGCGAGTTGCTGACACAGTTC TCTGCTGGCATCGCTGGCACCGGCATTGCAGTAATGTTCTCAGTTATGTGCAAGTTAGCTTGTGGTCCGGTGGTACCCTTATGCACATCGAAAGTGCTAA GCACAGGGTTGGGTTTTGGACTGGTGTGGCTCTCGTGGGCCGTAAATGAACTGCGTGACACGATAATTCGCGTCAGCAGGAACGCTGGCAAGGGCCTCAA GGACGAGGAGGTCGTAACCACTGTGAACAGAAGCTTGAAAGATGTTTACTTCAGAGCTGCAACTTTGCTTGCAGTAGCTGTTTTGAGAGTGGCATGA
AA sequence Show only first row Show all	>Lus10008158 pacid=23173764 polypeptide=Lus10008158 locus=Lus10008158.g ID=Lus10008158.BGIv1.0 annot-version=v1.0 MVKLCLMASHGCLPGSELLFQQEHHRVFKDWQPYLPNTLAGQEITRPVSLHLKPNGIELTNNHFPTVGEPVLINVTDEWTNRVLSGSGISGQCARHDRIM QFPKSRLNELEPLGLDLSEVSEPIDLQSLQLSVDLGPHMINTKGNFDSVNPLVDFLGDMARSSKITIQPDGRVLLTGSSTEIKNIIPIVAEFYLANSSTL RRKQLALIPQFNWHEYNTELSSSKVESVDSSTQKAKGKPSLKRRSSKRRSTKERDLYTRNYSHACESLLSLMMNKRHSGKTAILSLKKSGPELRELLTQF SAGIAGTGIAVMFSVMCKLACGPVVPLCTSKVLSTGLGFGLVWLSWAVNELRDTIIRVSRNAGKGLKDEEVVTTVNRSLKDVYFRAATLLAVAVLRVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02920			unknown protein		Lus10008158 [exp]	0	1
AT4G02920			unknown protein		Lus10008160 [exp]	1.0	0.9907
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	5.5	0.9792
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	8.5	0.9678
AT5G58620	C3HZnF		zinc finger (CCCH-type) family...		Lus10018243 [exp]	10.2	0.9707
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	10.8	0.9798
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001276 [exp]	13.6	0.9770
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10019348 [exp]	14.1	0.9710
AT1G78780			pathogenesis-related family pr...		Lus10029763 [exp]	15.5	0.9758
					Lus10000858 [exp]	16.0	0.9755
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Lus10020783 [exp]	17.9	0.9734

Compare expression of checked genes

Lus10008158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.