Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008157 [exp] 311 / 2e-106 ND 38 / 0.006 Lus10028069 [exp] 219 / 7e-72 ND / Lus10028040 [exp] 102 / 2e-25 AT3G19540 152 / 7e-43 Protein of unknown function (DUF620) (.1) Lus10003349 [exp] 97 / 3e-22 AT1G46912 48 / 2e-05 F-box associated ubiquitination effector family protein (.1.2) Lus10040838 [exp] 95 / 1e-21 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10000667 [exp] 93 / 1e-21 ND 51 / 4e-07 Lus10013907 [exp] 94 / 2e-21 ND / Lus10000668 [exp] 91 / 2e-21 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000665 [exp] 91 / 2e-21 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008159 pacid=23173755 polypeptide=Lus10008159 locus=Lus10008159.g ID=Lus10008159.BGIv1.0 annot-version=v1.0 ATGTTCGATTACAGTGACCGGAGAGCATCGTCTCTAATCTATTGGCTTTTGGATTTCAGGACTATTGCGCTTTCTCAGCTTCTTGGCTCCTCTTCCCGCG CCCGAGACGAAGCAGAATCATCATCTGCAGACGGCTTAGCTTACTCAGAGTATCGTTTCTGTGTGGTGCGTCTTTTACAATGTGGCAAGAACCTGGCCCT GGTGGTGTTTTCTTCCGAGACCGGGAAATGGCTGCACGTGCTTCTTAGAGATTCCCATAAAACGCCACGGACCATTGTAGTGTGGCTCAAGGACGAGTTG TGTTGGATGCATTATGAAGCCAGTTCCGATCGCACAGTGCTTTTGATGTTGGATGTTGAAGGTGTACGTGATTCTTCAAGGAATGCCTTGAGTGTTTGGA GACTGTATCTAGAAGATGATGAGTATTGGTGGAGGTGGAGCAAACAATGTGAAATAGAGTTGCAGACGGCCACTTCATCATCATCATCATCATCATTATG GGGTAAATATGAACTTGACAAGTGCTCTGTGCTTTGTCTGCATCCGGAGAAGCCGGAAATTGTCTTCTTTAAATACATGGAGGATTGTGTCTTCTCCTTT GATTTGAGGATGGGGACGACAGGAGAGCCGGAGTTCCTTTTTGCAGTGAAATTACAGTCCTATGAACCCAATTGGAGGGTGTTTCAGCCTAGAGTCTCTT GCTGGGCTACTCCAATTCCAAGGTACGACGACTTTCGAGGTATATACAATGGAAGATTCGATTGCTGGGTTCAGAACACTAGTGCAGGTGGTGCAACAAC ACTTCTCTCAACCAAGAGTTGCGTTCCGAAGAAGCAGAATCCGGTGAAAGGCAGCTTGGGTTCAGATAACAACTCGACATGA
AA sequence Show only first row Show all	>Lus10008159 pacid=23173755 polypeptide=Lus10008159 locus=Lus10008159.g ID=Lus10008159.BGIv1.0 annot-version=v1.0 MFDYSDRRASSLIYWLLDFRTIALSQLLGSSSRARDEAESSSADGLAYSEYRFCVVRLLQCGKNLALVVFSSETGKWLHVLLRDSHKTPRTIVVWLKDEL CWMHYEASSDRTVLLMLDVEGVRDSSRNALSVWRLYLEDDEYWWRWSKQCEIELQTATSSSSSSSLWGKYELDKCSVLCLHPEKPEIVFFKYMEDCVFSF DLRMGTTGEPEFLFAVKLQSYEPNWRVFQPRVSCWATPIPRYDDFRGIYNGRFDCWVQNTSAGGATTLLSTKSCVPKKQNPVKGSLGSDNNST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008159 [exp]	0	1
					Lus10023092 [exp]	13.9	0.6904
AT2G19130			S-locus lectin protein kinase ...		Lus10018537 [exp]	28.1	0.6399
AT4G03230			S-locus lectin protein kinase ...		Lus10033752 [exp]	30.0	0.6388
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	35.5	0.5940
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	57.0	0.6170
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10041381 [exp]	69.3	0.5692
AT3G42150			unknown protein		Lus10031451 [exp]	99.0	0.5816
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	101.0	0.5853
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017766 [exp]	106.0	0.5873
AT5G04020			calmodulin binding (.1)		Lus10031023 [exp]	114.3	0.5396

Compare expression of checked genes

Lus10008159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.