Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02920 175 / 5e-51 unknown protein AT1G03340 123 / 9e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008158 [exp] 614 / 0 AT4G02920 248 / 1e-78 unknown protein Lus10027996 [exp] 577 / 0 AT4G02920 254 / 4e-81 unknown protein Lus10029640 [exp] 295 / 1e-97 AT4G02920 250 / 3e-79 unknown protein Lus10042685 [exp] 291 / 4e-96 AT4G02920 233 / 7e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138200 [exp] 283 / 1e-92 AT4G02920 276 / 4e-89 unknown protein Potri.002G215800 [exp] 268 / 5e-87 AT4G02920 290 / 2e-94 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008160 pacid=23173788 polypeptide=Lus10008160 locus=Lus10008160.g ID=Lus10008160.BGIv1.0 annot-version=v1.0 ATGGTGAAGCTTTGTTTGATGGCTTCTCATGGCTGCCTTCCTGGTTCTGAGCTCTTGTTTCAGCAAGAACACCACAGGGTTTTCAAGGATTGGCAACCTT ATCTACCTAACACGCTGGCTGGACAAGAGATCACGAGACCAGTCTCCCTTCATCTGAAGCCGAACGGAATCGAACTCACCAACAACCACTTCCCAACTGT TGGAGAGCCTGTACTTATCAACGTAACAGATGAGTGGACAAATAGAGTTCTCTCCGGGTCTGGGATTTCTGGACAATGCGCCAGACATGACAGAATAATG CAATTCCCCAAATCTCGCCTGAACGAATTAGAACCATTTTCGAAAATTACCATTCAACCGGATGGTCGAGTACTGCTGACTGGCAGCAGCACAGAGATTA AGAACATCATCCCCATTGTTGCTGAGTTTTACCTGGCCAATAGTTCAACCTTGAGGAGAAAACAATTGGCGCTCATCCCCCAATTTAACTGGCACGAGTA CAACACCGAGCTTTCTTCATCCAAGGTCGAAAGTGTCGATAGCACTCAAAAGGCCAAGGGGAAGCCATCCCTTAAAAGGAGAAGCAGCAAGAGAAAGAGT ACTAAAGAGCGGGATCTCTACACGAGAAACTACTCCCACGCTTGCGAGAGCCTTCTTTCATTGATGATGAACAAGAGACATAGTGGGAAAACGGCGATCC TGTCACTCAAAAAGTCTGGCCCCGAGCTACGCGAGTTGCTGACACAGTTCTCTGCTGGCATCGCTGGCACCGGCATTGCAGTAATGTTCTCAGTTATGTG CAAGTTAGCTTGTGGTCCGGTGGTACCCTTATGCACATCGAAAGTGCTAAGCACGGGGTTGGGTTTTGGACTGGTGTGGCTCTCGTGGGCCGTAAACAAA CTGCGTGACACGATAATTCGCGTCAGCAGTAATGCTGGCAAGGGCCTCAAGGACGAGGAGGTCGTAACTACTGTGAACAGAAGCTTGAAAGATGTTTACT TCAGAGCTGCAACTTTGCTTGCAGTAGCTGTTTTGAGAGTGGCATGA
AA sequence Show only first row Show all	>Lus10008160 pacid=23173788 polypeptide=Lus10008160 locus=Lus10008160.g ID=Lus10008160.BGIv1.0 annot-version=v1.0 MVKLCLMASHGCLPGSELLFQQEHHRVFKDWQPYLPNTLAGQEITRPVSLHLKPNGIELTNNHFPTVGEPVLINVTDEWTNRVLSGSGISGQCARHDRIM QFPKSRLNELEPFSKITIQPDGRVLLTGSSTEIKNIIPIVAEFYLANSSTLRRKQLALIPQFNWHEYNTELSSSKVESVDSTQKAKGKPSLKRRSSKRKS TKERDLYTRNYSHACESLLSLMMNKRHSGKTAILSLKKSGPELRELLTQFSAGIAGTGIAVMFSVMCKLACGPVVPLCTSKVLSTGLGFGLVWLSWAVNK LRDTIIRVSSNAGKGLKDEEVVTTVNRSLKDVYFRAATLLAVAVLRVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02920			unknown protein		Lus10008160 [exp]	0	1
AT4G02920			unknown protein		Lus10008158 [exp]	1.0	0.9907
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10015049 [exp]	2.0	0.9864
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	3.0	0.9853
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10004460 [exp]	3.7	0.9839
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10018730 [exp]	6.5	0.9843
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033853 [exp]	6.7	0.9722
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10019348 [exp]	7.1	0.9776
AT4G36990	HSF	AT-HSFB1, ATHSF...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10009351 [exp]	7.5	0.9804
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	8.9	0.9848
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	10.2	0.9852

Compare expression of checked genes

Lus10008160 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.