Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02930 757 / 0 GTP binding Elongation factor Tu family protein (.1) AT4G20360 508 / 1e-176 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT5G60390 157 / 4e-42 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 157 / 4e-42 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 157 / 4e-42 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 157 / 4e-42 GTP binding Elongation factor Tu family protein (.1) AT5G10630 122 / 5e-29 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT1G18070 117 / 6e-28 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT4G18330 87 / 5e-18 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G31060 87 / 8e-18 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027995 [exp] 884 / 0 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10043342 [exp] 500 / 1e-173 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 471 / 4e-162 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10017957 [exp] 479 / 2e-158 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 447 / 2e-154 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10015895 [exp] 191 / 4e-58 ND / Lus10032910 [exp] 188 / 5e-56 ND / Lus10042590 [exp] 175 / 2e-51 ND / Lus10016136 [exp] 165 / 7e-46 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G215900 [exp] 770 / 0 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 753 / 0 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.001G110200 [exp] 505 / 1e-175 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.003G121600 [exp] 502 / 3e-174 AT4G20360 714 / 0.0 RAB GTPase homolog E1B (.1) Potri.006G130900 [exp] 161 / 1e-43 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 160 / 2e-43 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 160 / 3e-43 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 160 / 3e-43 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 160 / 3e-43 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 159 / 6e-43 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Lus10008161 pacid=23173787 polypeptide=Lus10008161 locus=Lus10008161.g ID=Lus10008161.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTCGTCCTCCGAAACCCTAATTCCAAGCGTCTCTTCACATCCTCTTTCCCAATCTACTGGGGCTGCCGAGGGGGATCAGCCATTACTCATC ATTCTTCTATCCACGGAAATGACTCCACCTCTCCTTCTGTTGCTTCGTGGTGGAGATCCATGGCCACCTTCACAAGGACTAAGCCTCACGTCAATGTTGG AACAATTGGCCACGTTGATCATGGAAAGACTACTCTTACTGCGGCAATTACCAGGGTACTGGCTGAAGAAGGTAAAGCTAAAGCTGTTGCCTTCGACGAA ATTGATAAGGCCCCAGAAGAGAAAAAGAGAGGAATTACTATTGCCACTGCCCATGTGGAGTATGAAACTGCAAAGCGTCATTATGCACATGTTGACTGTC CTGGACACGCAGATTACGTTAAAAACATGATTACGGGAGCTGCCCAAATGGATGGTGGAATTTTAGTGGTATCAGCCCCTGATGGTCCCATGCCGCAGAC AAAAGAACACATTTTGCTTGCTCGCCAGGTTGGTGTCCCATCGCTGGTTTGTTTCCTAAATAAATGTGATGCCGTTGATGACCCAGAACTACTAGAGCTT GTCGAAATGGAGCTCCGTGAGCTTCTGAGTTTCTACAAGTTTCCTGGAGATGATATCCCTATCATTAGGGGTTCAGCATTGTCTGCTTTACAAGGGACTA ACGAAGAGCTGGGGAAACAAGCCATTTTAAAGTTGATGGATGCTGTGGATGAGTATATCCCGGACCCAGTCCGCCAACTTGAAAAGCCATTCCTCATGCC CATCGAAGATGTTTTCTCCATTCAGGGTCGTGGAACTGTTGCAACTGGCCGTATCGAACAAGGGACAATCAAAGTGGGTGAAGAAGTTGAAATCTTGGGA CTTACATCGGGCGGTCCTCAAAAAACAACAGTTACTGGCGTTGAGATGTTCAAGAAAATTTTGGACAATGGACAAGCTGGTGACAATGTTGGTCTCCTTC TGCGTGGTTTGAAACGTGAAGATATAGAACGAGGACAGGTGATTGCCAAGCCTGGATCTCTGAAAACATACAAGAAATTCGAGGCGGAGATATATGTCCT GACCAAGGACGAAGGTGGTCGCCATACTGCCTTCTTCTCTAACTACAGGCCCCAGTTCTACATGAGAACTGCAGATATTACCGGTAAGGTGGAATTGCCT GAATCCGTGAAAATGGTCATGCCCGGCGACAATGTGACTGCCAATTTCGAGCTGATCCAACCGGTTCCTATGGAAGCAGGACAAAGATTTGCTTTGAGGG AAGGAGGTAGGACAGTTGGAGCAGGTGTTGTCTCGAAAGGAGATCCATCGGTGAGTAAGAGTGACGGAATTAATTACACCGAGCACTTTTTATCCGACAA TGTTTACTATACTGCCGAGGAAGCTTGTGAAAATGCAAAGCGAATTGCCAAGACGCTTAATTTCAAGTTAACTAAAGGATCCAACAGAATAAACAAGGCA GAGCGAGAGTACCGTGTGTATTTGTATTGCTCTCGGGGACCTGCTCGTAAATCCTTATGTTCCGACCCGTCGAAACGGATTACGAAAACGAAGAAGTGTG ATTGTCTGGCAGTGAGGTGTCGGGTCGTAGGTGGTGAGTGGAAGTTCTTTATTGACGGTGTAGGTCACACCAACAATCCTATAGTCTCAAAATGA
AA sequence Show only first row Show all	>Lus10008161 pacid=23173787 polypeptide=Lus10008161 locus=Lus10008161.g ID=Lus10008161.BGIv1.0 annot-version=v1.0 MASVVLRNPNSKRLFTSSFPIYWGCRGGSAITHHSSIHGNDSTSPSVASWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITRVLAEEGKAKAVAFDE IDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKCDAVDDPELLEL VEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEELGKQAILKLMDAVDEYIPDPVRQLEKPFLMPIEDVFSIQGRGTVATGRIEQGTIKVGEEVEILG LTSGGPQKTTVTGVEMFKKILDNGQAGDNVGLLLRGLKREDIERGQVIAKPGSLKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELP ESVKMVMPGDNVTANFELIQPVPMEAGQRFALREGGRTVGAGVVSKGDPSVSKSDGINYTEHFLSDNVYYTAEEACENAKRIAKTLNFKLTKGSNRINKA EREYRVYLYCSRGPARKSLCSDPSKRITKTKKCDCLAVRCRVVGGEWKFFIDGVGHTNNPIVSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02930			GTP binding Elongation factor ...		Lus10008161 [exp]	0	1
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10032268 [exp]	1.0	0.9578
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10018284 [exp]	1.4	0.9479
AT1G63660			GMP synthase (glutamine-hydrol...		Lus10024632 [exp]	2.4	0.9400
AT5G41970			Metal-dependent protein hydrol...		Lus10033229 [exp]	2.8	0.9260
AT5G05520			Outer membrane OMP85 family pr...		Lus10007514 [exp]	3.9	0.9276
AT2G18330			AAA-type ATPase family protein...		Lus10028305 [exp]	4.5	0.9239
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Lus10020542 [exp]	5.2	0.9252
AT3G27550			RNA-binding CRS1 / YhbY (CRM) ...		Lus10022280 [exp]	5.3	0.9163
AT1G74050			Ribosomal protein L6 family pr...		Lus10038775 [exp]	5.3	0.9381
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Lus10020369 [exp]	7.4	0.9210

Compare expression of checked genes

Lus10008161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.