Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40925 48 / 5e-07 F-box and associated interaction domains-containing protein (.1) AT2G40910 44 / 1e-05 F-box and associated interaction domains-containing protein (.1.2) AT2G15640 41 / 0.0001 F-box family protein (.1) AT5G65850 41 / 0.0002 F-box and associated interaction domains-containing protein (.1) AT1G46984 40 / 0.0003 F-box family protein (.1) AT1G31080 40 / 0.0003 F-box family protein (.1) AT1G11620 40 / 0.0004 F-box and associated interaction domains-containing protein (.1) AT5G37040 39 / 0.0005 F-box family protein (.1) AT3G17710 39 / 0.0005 F-box and associated interaction domains-containing protein (.1) AT3G17280 39 / 0.0007 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000667 [exp] 200 / 6e-65 ND 51 / 4e-07 Lus10000664 [exp] 202 / 3e-64 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) Lus10007302 [exp] 142 / 7e-41 AT1G15680 49 / 4e-06 F-box family protein (.1) Lus10040838 [exp] 141 / 5e-40 AT3G23950 57 / 2e-08 F-box family protein (.1) Lus10002769 [exp] 135 / 1e-39 AT1G15680 64 / 2e-11 F-box family protein (.1) Lus10013987 [exp] 139 / 1e-38 AT3G23950 59 / 1e-08 F-box family protein (.1) Lus10016522 [exp] 135 / 3e-37 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10035796 [exp] 133 / 3e-37 ND 45 / 1e-04 Lus10013986 [exp] 133 / 7e-37 ND 55 / 7e-08
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G004800 [exp] 79 / 8e-18 AT5G49610 65 / 3e-11 F-box family protein (.1) Potri.011G000700 [exp] 63 / 3e-12 AT3G15910 58 / 5e-09 unknown protein Potri.004G000900 [exp] 52 / 3e-08 AT4G12560 87 / 2e-18 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.013G067800 [exp] 46 / 3e-06 AT5G07610 131 / 4e-34 F-box family protein (.1) Potri.011G137200 [exp] 44 / 1e-05 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.010G254000 [exp] 43 / 2e-05 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.009G132400 [exp] 43 / 3e-05 ND / Potri.008G016300 [exp] 42 / 5e-05 AT5G07610 53 / 2e-08 F-box family protein (.1) Potri.005G043500 [exp] 42 / 6e-05 AT5G07610 135 / 7e-36 F-box family protein (.1) Potri.001G318400 [exp] 42 / 0.0001 AT3G06240 142 / 3e-38 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008162 pacid=23173773 polypeptide=Lus10008162 locus=Lus10008162.g ID=Lus10008162.BGIv1.0 annot-version=v1.0 ATGGCTATGATCGAGAATTGCAGTTCGTCGGATTGCGATGTGCCGCTAAGCTCATTCTTTGTCTGTTCCGACCCCGAAAAACGGCGCCGGATCAATCGGA TCGGCAAACTGGGGAATGATCTCCTTGTAGAGATTCTAATTCGGCTTCCGAACCCAAGATCCTCCTGGTGCTGCAAAACCGTCTGCAAGCAATGGGGTTC CGTCATCTCCGATCCCAGCTTCAATCGCCAGTTTATTGCTCGTCACCGCAGTAAGTACCAACCACCATCTCTGTTTCTTCCCGCACACGACCCGCAATCG ATCCTCAGCTTTCTCCCCGTTCCTGATCGACCAAAATTGAGAGTGTTTGATTGCTTCAAGGACTTGCTTTTATGCGGGTTTGCTGAAGAATTTGGCGAAT TGGAAAGATCCTACTTGATCTGCAATCCGTTTACGAAGCAATGGATCGCCCTTCCTTTAACAAATTGA
AA sequence Show only first row Show all	>Lus10008162 pacid=23173773 polypeptide=Lus10008162 locus=Lus10008162.g ID=Lus10008162.BGIv1.0 annot-version=v1.0 MAMIENCSSSDCDVPLSSFFVCSDPEKRRRINRIGKLGNDLLVEILIRLPNPRSSWCCKTVCKQWGSVISDPSFNRQFIARHRSKYQPPSLFLPAHDPQS ILSFLPVPDRPKLRVFDCFKDLLLCGFAEEFGELERSYLICNPFTKQWIALPLTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60370			F-box and associated interacti...		Lus10008162 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10031707 [exp]	1.7	0.8175
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	7.5	0.8063
AT2G32750			Exostosin family protein (.1)		Lus10007426 [exp]	9.7	0.7621
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Lus10037831 [exp]	10.7	0.7156
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	15.0	0.7663
					Lus10018970 [exp]	24.0	0.7551
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10009489 [exp]	26.3	0.7633
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	27.5	0.7418
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	27.7	0.7371
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10043483 [exp]	28.9	0.7211

Compare expression of checked genes

Lus10008162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.