Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63900 473 / 2e-168 DAL1 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) AT1G59560 306 / 8e-103 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027994 [exp] 617 / 0 AT1G63900 532 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Lus10003391 [exp] 131 / 1e-36 AT1G63900 124 / 1e-34 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G138000 [exp] 546 / 0 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12483 [flax] [poplar] GIDE E3 Ubiquitin ligase
Representative CDS sequence Show only first row Show all	>Lus10008163 pacid=23173780 polypeptide=Lus10008163 locus=Lus10008163.g ID=Lus10008163.BGIv1.0 annot-version=v1.0 ATGATGGTTCCATGGGGAGGAATCAGCTGCTGCTTAAGTGCCGCTGCCTTCTATTTGCTTGGCAGAAGCAGTGGCAGAGACGCTGAAGCTCTCAAGTCGG TCACAAGAGTCAATCAGCTCAAGGAATTGGCGAAACTATTCGACGTCGAGAACAGTCTACTGCCTCTAGTTGTTGCAATATCGGGTAGAGTTGGATCCGA GACACCGATAAACTGCGAGTTCAGCGGTCTGAGAGGTGTTATAGTGGAGGAGACGGCTGAACAGCATTTTCTGAAGCATAATGATGCTGGGTCTTGGATT CAAGATTCAACCTTGATGCTATCGATGAGTAAAGAGGTGCCGTGGTACTTGGATGATGGAACCGATCGTGCTTTCGTTCTTGGGGCTCGGGGTGCCTCTG GCTTTGTCCTGACTCTGGCAAGTGAAGTCTTTGAAGAATCCGGGCGGTCGCTGGTACGTGGAACACTTGATTATCTTCAGGGCTTGAAGATGCTTGGAGT GAAGCGGATTGAGAGGGTACTTCCAACTGGAACATCATTAACTGTAGTTGGCGAGGCTGTCAAAGATGATATTGGGAAAGTTCGGATTCAGCGTCCACAT AAAGGGCCCTTTTATGTATCTCCTAAAAACATTGATGAACTCATTGGCAATCTGGGGAAGTGGGCGAGCTTATATAAGTATGCCTCGGTTGGATTGACGG TGTTTGGTGCTTTTCTGATCGCTAAGCAAGCCGTAGAGTACATCATGGAGAGACGGCGGCGATGGGATCTACACAAAAAGGTTCTTGCTGCGGCTGCTGC AAAAAGATCAGGCAGTCAAGACACTGAAGGTTCGAATGCAACGGCTGAGGATGACTCAGATGCTTCCAAGAGAGACTGTATTCCAGATATATGCGTAATA TGTCTCGAGAATGAGTACAACGCTGTGTTTCTACCGTGTGGCCATATGTGCTGTTGTACAACTTGCTGTTCGCATCTAAGCAGCTGCCCACTTTGCCGGA GACGGATAGAACAGGTGGTTAAGACATACCGGCATTGA
AA sequence Show only first row Show all	>Lus10008163 pacid=23173780 polypeptide=Lus10008163 locus=Lus10008163.g ID=Lus10008163.BGIv1.0 annot-version=v1.0 MMVPWGGISCCLSAAAFYLLGRSSGRDAEALKSVTRVNQLKELAKLFDVENSLLPLVVAISGRVGSETPINCEFSGLRGVIVEETAEQHFLKHNDAGSWI QDSTLMLSMSKEVPWYLDDGTDRAFVLGARGASGFVLTLASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAVKDDIGKVRIQRPH KGPFYVSPKNIDELIGNLGKWASLYKYASVGLTVFGAFLIAKQAVEYIMERRRRWDLHKKVLAAAAAKRSGSQDTEGSNATAEDDSDASKRDCIPDICVI CLENEYNAVFLPCGHMCCCTTCCSHLSSCPLCRRRIEQVVKTYRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G63900		DAL1	DIAP1-like protein 1, E3 Ubiqu...		Lus10008163 [exp]	0	1
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	1.4	0.8533
AT1G61065			Protein of unknown function (D...		Lus10018474 [exp]	1.4	0.8530
AT4G31270	Trihelix		sequence-specific DNA binding ...		Lus10026986 [exp]	3.9	0.8256
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	4.5	0.8238
AT3G26600		ARO4	armadillo repeat only 4 (.1)		Lus10026695 [exp]	6.5	0.8075
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	6.7	0.7936
AT2G14910			unknown protein		Lus10013888 [exp]	6.9	0.8076
AT3G09830			Protein kinase superfamily pro...		Lus10013812 [exp]	7.4	0.8109
AT3G20300			Protein of unknown function (D...		Lus10033919 [exp]	8.5	0.7618
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	8.9	0.8026

Compare expression of checked genes

Lus10008163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.