Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20050 162 / 2e-51 HYD1 HYDRA1, C-8,7 sterol isomerase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027993 [exp] 238 / 3e-81 AT1G20050 266 / 1e-90 HYDRA1, C-8,7 sterol isomerase (.1) Lus10015386 [exp] 233 / 2e-79 AT1G20050 261 / 1e-88 HYDRA1, C-8,7 sterol isomerase (.1) Lus10032965 [exp] 231 / 1e-78 AT1G20050 261 / 5e-89 HYDRA1, C-8,7 sterol isomerase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G160500 [exp] 194 / 7e-64 AT1G20050 269 / 4e-92 HYDRA1, C-8,7 sterol isomerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05241 [flax] [poplar] EBP EXPERA (EXPanded EBP superfamily)
Representative CDS sequence Show only first row Show all	>Lus10008164 pacid=23173783 polypeptide=Lus10008164 locus=Lus10008164.g ID=Lus10008164.BGIv1.0 annot-version=v1.0 ATGACAAACCGTTTGTTGACAGGGAAAGAATACAGCAAGGGTGATTCAAGATATGCAGCGAGAGATTCTGGTGTAGTCTCTGTGGAAGGCTTGACTGCAG TCTTGGAAGGTCCAGCGTGCCTTTTAGCCGTATATGGTATTGCTGCAGGGAAGTCCTACAGCTACATACTGCAGTTTGCTATTTCTTTAGGCCAGCTATA TGGAACTGCAGTCTATTTCATTACCGCTTATCTCGAAGGCGATAACTTTGCTGCCACTCCCTTTTACTACTGTGGCTACTACATTGGTGCAAATGCTTCC TGGGTTGTCATACCTTCACTCATCGCCTTGCGCTGTTGGAGGAAGACTTGTCACGCCTTCAACGTCCAAGCAACATCCAGAAAGACCAAAATTCGCTGA
AA sequence Show only first row Show all	>Lus10008164 pacid=23173783 polypeptide=Lus10008164 locus=Lus10008164.g ID=Lus10008164.BGIv1.0 annot-version=v1.0 MTNRLLTGKEYSKGDSRYAARDSGVVSVEGLTAVLEGPACLLAVYGIAAGKSYSYILQFAISLGQLYGTAVYFITAYLEGDNFAATPFYYCGYYIGANAS WVVIPSLIALRCWRKTCHAFNVQATSRKTKIR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10008164 [exp]	0	1
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10002496 [exp]	5.9	0.8670
AT5G65820			Pentatricopeptide repeat (PPR)...		Lus10011566 [exp]	6.3	0.8607
					Lus10002317 [exp]	13.2	0.8625
					Lus10002764 [exp]	14.5	0.8614
					Lus10038295 [exp]	18.2	0.8612
AT1G01180			S-adenosyl-L-methionine-depend...		Lus10013195 [exp]	21.9	0.8570
AT3G13000			Protein of unknown function, D...		Lus10033328 [exp]	22.9	0.8221
AT2G38150			alpha 1,4-glycosyltransferase ...		Lus10027772 [exp]	25.5	0.8539
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10003471 [exp]	27.6	0.8512
AT2G19860		ATHXK2	ARABIDOPSIS THALIANA HEXOKINAS...		Lus10034980 [exp]	28.0	0.8387

Compare expression of checked genes

Lus10008164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.