Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43990 72 / 2e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027992 [exp] 387 / 1e-131 AT2G43990 86 / 1e-17 unknown protein Lus10027108 [exp] 141 / 5e-38 AT2G43990 95 / 8e-21 unknown protein Lus10008351 [exp] 138 / 8e-36 AT2G43990 93 / 1e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002200 [exp] 88 / 1e-18 AT2G43990 246 / 3e-72 unknown protein Potri.007G145400 [exp] 87 / 3e-18 AT2G43990 252 / 3e-74 unknown protein Potri.014G137850 [exp] 49 / 2e-06 AT2G48090 44 / 1e-05 unknown protein Potri.001G287500 [exp] 40 / 0.001 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008165 pacid=23173796 polypeptide=Lus10008165 locus=Lus10008165.g ID=Lus10008165.BGIv1.0 annot-version=v1.0 ATGCTGCCCTCGAGGGTGTCTCAGGCAAGAAGTACTGGAGATGTGTCGTCTGGTTTGAATGTTACAGGCATTGGGGATGAAGGGAAATGTAAAGATAGTA GCAGTAGCTTGAAGAGTAGTAATTCAGAGAGTAGCATTGGCACGAAAACTCCTCCGCTTCATAGCACAATATCCCCTGAGGAGATACAACAACAGTGTCC ATCTTCTTCAAAGAGTGTAACCATGACACCTGTTTACTATGGAGCTGGCCATCTTTTGTCCGGAACCCCAGACAAGAGGAAGTGTAGGCCTAGGGGCTTA CTTGTTGTTGGGGAAGAAATAGTTATCGATAAGTTTGACATTGATGATCATGATTCTGGCGATCTTGCATTCCCTGTCAAGGCTTCAATGCATTGGCTTC ATTCACCTGGTAGTAGCTCTTGGAACGGTGCTCAATATTGTTGTGGGTTGGTGCGTCGTGCTATAGACAAAGATTCTCCTCCTCCTGCTTTGCCCTCTTC TAGCTGCAGCTACAATGCATCATCTGATATGTCCGACAAGAACACCAGGAGAATGCCACATTCTTCACGCAGTCAGTCTCCTGAATTCGGAATTAACAGT GTTATCCATATCCTTCACAAAGCAAGCAAAACCCTCACTGGTTCTCAAATGGAAAGCATCACCAGGAAAAACGGGTGCCCTCTGAATCACATCTGTCAAA AGCTCTGCAAGAAGGCAGTGGTTGGTGGTCCTGCAACTACCTCGGCTCGAATCGGCCCCACCCCCATCGCCACTAACAACAACAACACTCGCCTTCTCCC TACTACCCCGCCAGTGGTGGCTGCGGTCCAATCAAGGGCCACAGCCACCATTATGCAACTGGTTGCTGAAAAACCACACCTGTCAGAGGAAAAGAAGAAC AGAGTCGTGTCGTTCAAGCCGGAGGAGTCGACGACGATGGTGAAGTCGTCTGGGGTCCATGTGGAGGACAAGTTTGGGGACTACATTGGGCGAGTGAAGA AGAAGCTTAGGACATTTTCGACTTTGAATAGTAAGCATAATAGCTCAGCATCATTGATGTCAGCAGATGGCGGGAGAGACGAGTTCTCTGATTACATCAG CCATGTCAAGAACAACTTCACCCAGAATTCTTCAACTAGTACTGCTGCTAACTACATGTAA
AA sequence Show only first row Show all	>Lus10008165 pacid=23173796 polypeptide=Lus10008165 locus=Lus10008165.g ID=Lus10008165.BGIv1.0 annot-version=v1.0 MLPSRVSQARSTGDVSSGLNVTGIGDEGKCKDSSSSLKSSNSESSIGTKTPPLHSTISPEEIQQQCPSSSKSVTMTPVYYGAGHLLSGTPDKRKCRPRGL LVVGEEIVIDKFDIDDHDSGDLAFPVKASMHWLHSPGSSSWNGAQYCCGLVRRAIDKDSPPPALPSSSCSYNASSDMSDKNTRRMPHSSRSQSPEFGINS VIHILHKASKTLTGSQMESITRKNGCPLNHICQKLCKKAVVGGPATTSARIGPTPIATNNNNTRLLPTTPPVVAAVQSRATATIMQLVAEKPHLSEEKKN RVVSFKPEESTTMVKSSGVHVEDKFGDYIGRVKKKLRTFSTLNSKHNSSASLMSADGGRDEFSDYISHVKNNFTQNSSTSTAANYM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G43990			unknown protein		Lus10008165 [exp]	0	1
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	3.0	0.8767
AT3G48660			Protein of unknown function (D...		Lus10035198 [exp]	3.9	0.8398
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	5.3	0.8991
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	6.0	0.8406
AT3G46620			zinc finger (C3HC4-type RING f...		Lus10012376 [exp]	6.1	0.8126
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10042419 [exp]	6.5	0.8554
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	7.3	0.8820
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	8.0	0.8519
AT5G12300			Calcium-dependent lipid-bindin...		Lus10001346 [exp]	10.4	0.8447
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10001594 [exp]	15.4	0.8157

Compare expression of checked genes

Lus10008165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.