Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02940 464 / 1e-158 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT2G48080 414 / 4e-141 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) AT1G14710 165 / 4e-44 hydroxyproline-rich glycoprotein family protein (.1.2) AT4G36090 128 / 5e-32 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.2), oxidoreductase, 2OG-Fe(II) oxygenase family protein (.3) AT2G17970 125 / 4e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT1G48980 103 / 3e-24 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027990 [exp] 860 / 0 AT4G02940 535 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10042669 [exp] 642 / 0 AT4G02940 498 / 5e-172 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10029637 [exp] 630 / 0 AT4G02940 503 / 4e-174 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10028462 [exp] 112 / 3e-26 AT2G17970 542 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10041917 [exp] 112 / 4e-26 AT2G17970 549 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Lus10028670 [exp] 83 / 1e-17 AT2G17970 249 / 5e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137700 [exp] 551 / 0 AT4G02940 542 / 0.0 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.010G102100 [exp] 161 / 2e-42 AT1G14710 421 / 3e-139 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.008G138900 [exp] 159 / 1e-41 AT1G14710 423 / 6e-140 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.002G210732 [exp] 114 / 9e-30 AT4G02940 123 / 2e-33 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Potri.005G114800 [exp] 119 / 1e-28 AT2G17970 504 / 1e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) Potri.007G012200 [exp] 113 / 1e-26 AT2G17970 458 / 2e-157 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10008166 pacid=23173758 polypeptide=Lus10008166 locus=Lus10008166.g ID=Lus10008166.BGIv1.0 annot-version=v1.0 ATGCCGATGGCGGCGGCAGCAGTGCAAAGGTCTCCGACGAGCGCGGCAGAGCGAGCTGTCGTACCGGTCGTCCAGGGGGCGGCGGCAGCAGGGCCGGTGA TGATGACGACGACGGCCGATGCTTCATCCGCCATCGCCAAGGACGCGATCCTGTCCTGGTTCAGGGGAGAATTCGCAGCCGCGAACGCGATTATCGATGC ATTGTGCGGACACCTGGCGCAGGTAGGCGGCGGCGGAGGTGCTGGATCGGACTACGAGGCGGTTTTCTCCGCCATCCACAGGAGGAGGCTCAAATGGGTA CCCGTGCTCCCGATGCAGAAGTACCACTCCATTGCTGACGTGGCGGTGGAGCTGAGGCGAGTCTCCGAGCGGAAATCGCCGGAGAAGACGGCTGATAGTA AGTTGAATGATAATCACAAGGAAACAGAGGAGGTTGTTGTGGATGTGAAACGCGAGGAGGATTGGGAAGGATGTAACAAAGAGGAGCCCGACAATAATAA GATTACTAGTATGATTGATATATGCACCAACCATCAGGATTGCGATGCTCGTCCTACTCACATCAAGTTGACCAAAGGCTTCTCCGCCAAGGAACATGTG AATGTTGTGAAAGGGCTGAAACTGTTTGAAGATGTGCTCACTGTCTCAGAGCTCTCCAAGCTGACCCGTTTCGTCAACCAACTCCGTCTTTCTGGACAGA ATGGCCAACTTACAGGTGATACGTTCATCCTGTTCAACAAGCAGATGAAGGGGAACAAGAGGGAGCTGATTCAGTTTGGTGTTCCGATTTTCGAGCACAT CAAAGAAGATGCTAGCAACCAAACCTGCAATATAGAACCAATCCCAGCTCTTCTTGAAGGAGTGATCAATCACCTTGTCCAGTGGCATCTGATCCCTGAA TATCGAAGGCCGAATGGTTGCATCATCCATTTCTTTGACGAGGATGAATTCTCGCAACCATTCCAGAAGCCACCTCATGTAGACCAACCAGTAGCTACTC TTCTCCTCTCTGAATCCACCATGGCGTTTGGACGCACTCTTGCTGGTGACAATGACGGGAACTACAGAGGTCCCCTGGTTCTTTCACTGAAAGAAGGGTC ACTTCTGGTAATGAGAGGCAACAGCGCGGACATGGCGAGGCACGTAATGTGTCCTTCCTCGAACAAAAGGATCAGCATCACCTTCTTCCGAGTCCGCGAG CTGCCACACATCCAAACCCACTCGCCACCGACTAGTCCAATGAGCACCAGTGCACTCACAGTCTGGCAGCCAACAACAAGCCTTCCATACAACAACGGAT ACGAAACCATGGACACAATAGCGCAGTGGGGTACAGTGGTTCGTGCCCCTGTGGTGATGCTAGCACCCATGGCCCACCCCGTTATGGTAACCTCAAAACG AATGATGCCACAGGGCGGAACAGGAGTGTTCCTACCATGGGCCGCCGCTGCTGCTTCTAGTACAAGGAAACCTGCAAAGCAACTTCCGCCACGAGCACAA AGGGCCGGTCGTTACTTGGCATTGCCTTCCGCGGTGGCTGAGACCCGCCACGTGGCAGATTCGTCCAACGAGACGGCCATTAGCGTCGGAGGAGTATCCC CATGA
AA sequence Show only first row Show all	>Lus10008166 pacid=23173758 polypeptide=Lus10008166 locus=Lus10008166.g ID=Lus10008166.BGIv1.0 annot-version=v1.0 MPMAAAAVQRSPTSAAERAVVPVVQGAAAAGPVMMTTTADASSAIAKDAILSWFRGEFAAANAIIDALCGHLAQVGGGGGAGSDYEAVFSAIHRRRLKWV PVLPMQKYHSIADVAVELRRVSERKSPEKTADSKLNDNHKETEEVVVDVKREEDWEGCNKEEPDNNKITSMIDICTNHQDCDARPTHIKLTKGFSAKEHV NVVKGLKLFEDVLTVSELSKLTRFVNQLRLSGQNGQLTGDTFILFNKQMKGNKRELIQFGVPIFEHIKEDASNQTCNIEPIPALLEGVINHLVQWHLIPE YRRPNGCIIHFFDEDEFSQPFQKPPHVDQPVATLLLSESTMAFGRTLAGDNDGNYRGPLVLSLKEGSLLVMRGNSADMARHVMCPSSNKRISITFFRVRE LPHIQTHSPPTSPMSTSALTVWQPTTSLPYNNGYETMDTIAQWGTVVRAPVVMLAPMAHPVMVTSKRMMPQGGTGVFLPWAAAAASSTRKPAKQLPPRAQ RAGRYLALPSAVAETRHVADSSNETAISVGGVSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10008166 [exp]	0	1
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	2.2	0.7341
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	6.5	0.7637
AT2G02230		ATPP2-B1	phloem protein 2-B1 (.1)		Lus10029673 [exp]	8.4	0.7971
AT3G01720			unknown protein		Lus10014878 [exp]	10.2	0.7031
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	11.0	0.6961
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	12.6	0.7211
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Lus10031306 [exp]	13.9	0.6714
AT5G47760		ATPK5, ATPGLP2	2-phosphoglycolate phosphatase...		Lus10039102 [exp]	14.1	0.6700
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	14.7	0.7298
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	16.0	0.7444

Compare expression of checked genes

Lus10008166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.