Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 391 / 6e-136 ATPA2 peroxidase 2 (.1) AT2G38380 385 / 1e-133 Peroxidase superfamily protein (.1) AT5G06730 383 / 1e-132 Peroxidase superfamily protein (.1) AT3G49120 381 / 7e-132 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT3G32980 381 / 1e-131 Peroxidase superfamily protein (.1) AT2G38390 375 / 1e-129 Peroxidase superfamily protein (.1) AT3G49110 374 / 6e-129 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08770 362 / 2e-124 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 355 / 2e-121 Peroxidase superfamily protein (.1) AT5G19880 314 / 8e-106 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027989 [exp] 666 / 0 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10027984 [exp] 568 / 0 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008173 [exp] 553 / 0 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008168 [exp] 510 / 0 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10008174 [exp] 484 / 2e-172 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 479 / 3e-170 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 367 / 1e-126 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 316 / 2e-106 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 318 / 1e-105 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 446 / 1e-157 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 436 / 1e-153 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.001G011300 [exp] 418 / 2e-146 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G013000 [exp] 417 / 2e-146 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 415 / 2e-145 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 415 / 4e-145 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G215001 [exp] 412 / 6e-144 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.001G011000 [exp] 410 / 1e-143 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 409 / 4e-143 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 390 / 9e-136 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008167 pacid=23173792 polypeptide=Lus10008167 locus=Lus10008167.g ID=Lus10008167.BGIv1.0 annot-version=v1.0 ATGGCTATGGTATCAATGTCTTCACTTGTAGTTTCTTCGTTGATGGCGATAATGCTATCATTCGTTGGAGCGAGCTACGCACAACAGCTCACTCCGACGT TCTACAACCCAACGTGCCCCAATTTGGTCAGCATCGTTCGCCAGGTTCTTCAGAATGCCGCCATGACCGATCCTAGAATCGGTGCCAGCATGATCAGGCT TCACTTCCATGACTGCTTCGTCAATGGATGTGACGGATCAATATTGCTGGACAACAGTGCGACGATAGTGAGCGAGAAACAAGCTGCTCCTAACAACAAC TCCGTCAGAGGGTTCGAAGTCATCGATCAGATGAAGACCCAGGTCGAAGCTGCTTGCCCCGGGATCGTTTCTTGTGCCGATATTCTCACCATCGCTTCTG AAGAATCCGTCGTTTTGGTACGTAAAATTCTTCAAGCTCGAGCCCTAGGATCTTTAGGAGGGCCGTCATGGGCAGTTCCACTAGGAAGGAGGGACAGCTT GACTGCGAACAGGAGTTTAGCAAATTCAGCACTCCCACCTCCCTTTTTCACTGTCCCTCAGCTCAAAGCCGCTTTCAATGCTGTCGGTCTCAACACCACC ACTGATCTCGTTGCCCTCTCTGGTGCTCACACGTTCGGAAGGGCAGCATGCGGAGGATTCGTGGGTCGTCTCTACAACTTCAACAACACAGGAGGCCCAG ACCCAACAATCAACGCCACCTTTCTCCAGACCCTCCGCCAACTCTGCCCTCAGAACGGAAATGCCAGCGTTTTGGCCAACCTCGACAAAACAACTGCCAA CACATTCGATTCGGCCTATTTCAGAAACCTTCAGACCAGAGAAGGTCTCCTCCAGAGTGACCAGGAACTCTTCTCTACTCCCGGCTCTGACACCATCGCC ATCGTCAACAGGTTCGCCACAAACCAGACGGCCTTCTTCCAGAGCTTTGTGAACTCCATGATTAGGATGGGGAACATTCGCCCTCCGGCTGGGAGTCCGA GCCAAATTAGGCGGAATTGCAGGGTTGTTAACTCCGCTTCTACTGATTTCGCTGATGATTCGATTATTACTATTCCGACGGGCGTAGTTGATACAGATGG GTTCGCAAGTGATATGTGA
AA sequence Show only first row Show all	>Lus10008167 pacid=23173792 polypeptide=Lus10008167 locus=Lus10008167.g ID=Lus10008167.BGIv1.0 annot-version=v1.0 MAMVSMSSLVVSSLMAIMLSFVGASYAQQLTPTFYNPTCPNLVSIVRQVLQNAAMTDPRIGASMIRLHFHDCFVNGCDGSILLDNSATIVSEKQAAPNNN SVRGFEVIDQMKTQVEAACPGIVSCADILTIASEESVVLVRKILQARALGSLGGPSWAVPLGRRDSLTANRSLANSALPPPFFTVPQLKAAFNAVGLNTT TDLVALSGAHTFGRAACGGFVGRLYNFNNTGGPDPTINATFLQTLRQLCPQNGNASVLANLDKTTANTFDSAYFRNLQTREGLLQSDQELFSTPGSDTIA IVNRFATNQTAFFQSFVNSMIRMGNIRPPAGSPSQIRRNCRVVNSASTDFADDSIITIPTGVVDTDGFASDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008167 [exp]	0	1
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Lus10029429 [exp]	1.7	0.9252
AT2G38870			Serine protease inhibitor, pot...		Lus10024870 [exp]	22.4	0.8336
AT1G66880			Protein kinase superfamily pro...		Lus10009149 [exp]	26.6	0.7762
AT2G38870			Serine protease inhibitor, pot...		Lus10018784 [exp]	34.9	0.7828
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	37.8	0.8292
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	45.3	0.7582
					Lus10029807 [exp]	95.4	0.7857
AT1G55170			unknown protein		Lus10015629 [exp]	107.5	0.7819
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10007841 [exp]	114.7	0.7860
AT1G66880			Protein kinase superfamily pro...		Lus10009150 [exp]	198.6	0.7540

Compare expression of checked genes

Lus10008167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.