Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06720 391 / 4e-136 ATPA2 peroxidase 2 (.1) AT2G38380 389 / 5e-135 Peroxidase superfamily protein (.1) AT5G06730 387 / 2e-134 Peroxidase superfamily protein (.1) AT2G38390 382 / 3e-132 Peroxidase superfamily protein (.1) AT3G49110 370 / 9e-128 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT3G49120 367 / 1e-126 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT3G32980 364 / 2e-125 Peroxidase superfamily protein (.1) AT4G08770 358 / 5e-123 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 351 / 3e-120 Peroxidase superfamily protein (.1) AT5G19880 324 / 6e-110 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027989 [exp] 514 / 0 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10027984 [exp] 510 / 0 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10008167 [exp] 509 / 0 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008173 [exp] 485 / 6e-173 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008174 [exp] 457 / 4e-162 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10027983 [exp] 456 / 2e-161 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 395 / 7e-138 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10027988 [exp] 360 / 6e-126 AT5G06720 218 / 2e-70 peroxidase 2 (.1) Lus10026748 [exp] 320 / 4e-108 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 447 / 5e-158 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 437 / 4e-154 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.003G215001 [exp] 416 / 7e-146 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.001G013000 [exp] 413 / 1e-144 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 412 / 1e-144 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 410 / 1e-143 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 410 / 1e-143 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 409 / 4e-143 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 400 / 1e-139 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.016G058200 [exp] 384 / 2e-133 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008168 pacid=23173770 polypeptide=Lus10008168 locus=Lus10008168.g ID=Lus10008168.BGIv1.0 annot-version=v1.0 ATGGGTGTCTTGTCTTTGGTTGCCACATTGTTGATGCTGTTGAGCATTGGAGTGAGCAATGCACAGCTGACACCAACGTTCTACAACACGACGTGCCCCG AAGTGACCAACATCGTCCGTCAAGTTCTTCAGAATTTCGCATTCACCGACCCTAGAATCGGGGCCAGCCTTATCAGGCTTCACTTCCACGATTGCTTTGT TACGGGGTGCGACGCATCGGTCCTGCTGGACAACAATGCGAATGCGATGATCGAGAGCGAGAAGCAAGCGGCTCCGAATAACGGATCCTTGAGAGGGTTC GAAGTCGTTGATGCGATGAAGAGCCAGATCGAAGCTGTTTGCCCCGGAGTTGTTTCTTGTGCCGATATTCTCAGCATTGCTTCTGAAGAATCTGTTGTCT TGGCTGGAGGGCCATCATGGGCAGTTCCGTTGGGAAGGCTGGATAGCGTAGCTGCAAACAGGACATTAGCAAATTCAGCACTTCCACCTCCGTTTTTCAC CGTCGATCAGCTGAAAGCTATGTTCGCCGCCGTAGGCCTCAACACCACCGTAGACCTCGTTGCTCTCTCGGGAGCGCACACTTTCGGAAGGGCCCAATGC GGAAACTTCGTAAACAGGCTTTACAACTTCAACGGCACAGGAAGCCCAGACCCAACAGTCAACGCTACCTACCTCCAAACCCTTCAGCAGCTCTGCCCTC AGAACGGATCCGTTGCCGTTTTGGCCAACCTGGACCGCTCCACCGCCGACGGATTCGACTCCACATACTTTACCAATCTCCAGACCCAGGAGGGGCTCCT TGAGAGCGACCAGGCACTGTTCTCCACTCCGAATTCCGACACCATCGCACTCGTGAACACCTTTAGCGCCAACCAGACGGCCTTCTTCGAGAGCTTTGTT AACTCCATGATTAGGATGGGCAACATTCCTCCCCCCGCTGGGAGTGCCGGTGAGATTAGGCTCAATTGCAGGGTTATTAACCCTGCTGCTTCTGGTACTG CTGTGATTACAACTCCGGCTGGTTTTGTTGATGTGGACGGTGGTGAGGAGATGAACCGATTTGCTAGTGATATTTGA
AA sequence Show only first row Show all	>Lus10008168 pacid=23173770 polypeptide=Lus10008168 locus=Lus10008168.g ID=Lus10008168.BGIv1.0 annot-version=v1.0 MGVLSLVATLLMLLSIGVSNAQLTPTFYNTTCPEVTNIVRQVLQNFAFTDPRIGASLIRLHFHDCFVTGCDASVLLDNNANAMIESEKQAAPNNGSLRGF EVVDAMKSQIEAVCPGVVSCADILSIASEESVVLAGGPSWAVPLGRLDSVAANRTLANSALPPPFFTVDQLKAMFAAVGLNTTVDLVALSGAHTFGRAQC GNFVNRLYNFNGTGSPDPTVNATYLQTLQQLCPQNGSVAVLANLDRSTADGFDSTYFTNLQTQEGLLESDQALFSTPNSDTIALVNTFSANQTAFFESFV NSMIRMGNIPPPAGSAGEIRLNCRVINPAASGTAVITTPAGFVDVDGGEEMNRFASDI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	1.0	0.9737
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008918 [exp]	2.4	0.9644
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10003063 [exp]	4.0	0.9574
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Lus10031188 [exp]	6.0	0.9553
					Lus10021010 [exp]	6.3	0.9594
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10003058 [exp]	6.5	0.9489
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	6.9	0.9629
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	7.7	0.9580
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039300 [exp]	10.4	0.9355
					Lus10041161 [exp]	10.8	0.9568

Compare expression of checked genes

Lus10008168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.