Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03360 458 / 2e-163 ATRRP4 ribosomal RNA processing 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027982 [exp] 620 / 0 AT2G48060 1580 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G194400 [exp] 536 / 0 AT1G03360 461 / 2e-164 ribosomal RNA processing 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008171 pacid=23173789 polypeptide=Lus10008171 locus=Lus10008171.g ID=Lus10008171.BGIv1.0 annot-version=v1.0 ATGCGAGGGATTCATTTGCCTTTGAATCAAACTCAGAAGATTCGGTTACAGAGAGCTTTGCAGCAGCTTGAATCACTCTCTTCGAAGGTCAATTCAAATG CCTCCGTCACCGTCGCCGACACCATCCCCATTAACAACGAAGACAGTATTCTCAAGGGACATGGGACCTCGGAGCGCGATGGTGAAATGGTGGCTACTTT GTGTGGGGTGGTTGAGCGGGTCAACAAGTTGGTTTATGTGCGGACCTTGCGCGCTAGGTATAAGCCCGAGGTTGGAGATATCATAGTGGGTCGCGTTGTT GAGGTGGGTCAAAATCGTTGGAAACTGGAAATAAACTTCAGTCAAGATGCAGTGTTAATGCTTTCCTCGATGAACTTGCCTGATGGTATGCAGAGGCGAC GAACTGCATTGGATGAGCTCAACATGCGCATTATATTTGAGGAGAATGATGTTGTGTGCGCTGAGGTTCGTAACTTCCAGCATGATGGCACCCTGCAACT GCAAGCTAGAAGTCAGAAGTATGGAAAGCTTGAGAAGGGTCAGCTACTAAAGGTTCCGCCGTACCTGGTGAGGAGACAGAAGCATCATTTCCACCATCTG GATCAGTACGCCGTTGATGTAATCCTCGGATGCAACGGTTTCATCTGGGTTGGTGAACATATCGAAGTCCGAGAGAGTATGGCAGAGGACCAAACAAACA ACATAATGGAACAGAAGTCAAAGGCTCAGAAACCCATCTACGTGGCAACGCCATTGGAGACAAGGAGGCACATATGCCAAATCGCAAATTGTATCCGGGT GCTGTCGAGTTTAGGGTTCAACATGACTCTAGAAGTGATATTGGAAGCCGTCAACTTGAGCAGCAAGCTTAACATTGGTGTTGATGAAATGCTGGGACCT GAGTTCCATGTTGCACTCGCTGAGAGAGAGGCTGAGCGGCGTTCGCAATCCAAGAGGAAAGGATGA
AA sequence Show only first row Show all	>Lus10008171 pacid=23173789 polypeptide=Lus10008171 locus=Lus10008171.g ID=Lus10008171.BGIv1.0 annot-version=v1.0 MRGIHLPLNQTQKIRLQRALQQLESLSSKVNSNASVTVADTIPINNEDSILKGHGTSERDGEMVATLCGVVERVNKLVYVRTLRARYKPEVGDIIVGRVV EVGQNRWKLEINFSQDAVLMLSSMNLPDGMQRRRTALDELNMRIIFEENDVVCAEVRNFQHDGTLQLQARSQKYGKLEKGQLLKVPPYLVRRQKHHFHHL DQYAVDVILGCNGFIWVGEHIEVRESMAEDQTNNIMEQKSKAQKPIYVATPLETRRHICQIANCIRVLSSLGFNMTLEVILEAVNLSSKLNIGVDEMLGP EFHVALAEREAERRSQSKRKG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03360		ATRRP4	ribosomal RNA processing 4 (.1...		Lus10008171 [exp]	0	1
AT3G29310			calmodulin-binding protein-rel...		Lus10026469 [exp]	2.6	0.7984
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	4.0	0.8535
AT5G56940			Ribosomal protein S16 family p...		Lus10025984 [exp]	9.5	0.8031
AT2G33840			Tyrosyl-tRNA synthetase, class...		Lus10029613 [exp]	10.0	0.7650
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	10.2	0.8177
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	11.7	0.8000
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10019544 [exp]	13.9	0.8031
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	16.6	0.7842
AT2G15730			P-loop containing nucleoside t...		Lus10042667 [exp]	19.7	0.7476
AT1G78650		POLD3	DNA-directed DNA polymerases (...		Lus10013748 [exp]	20.6	0.8011

Compare expression of checked genes

Lus10008171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.