Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56290 389 / 2e-128 CwfJ-like family protein (.1) AT5G56900 74 / 6e-14 C3HZnF CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022209 [exp] 595 / 0 AT1G56290 751 / 0.0 CwfJ-like family protein (.1) Lus10021219 [exp] 462 / 1e-156 AT1G56290 739 / 0.0 CwfJ-like family protein (.1) Lus10027982 [exp] 0 / 1 AT2G48060 1580 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415900 [exp] 517 / 3e-177 AT1G56290 768 / 0.0 CwfJ-like family protein (.1) Potri.006G152100 [exp] 93 / 9e-20 AT5G56900 852 / 0.0 CwfJ-like family protein / zinc finger (CCCH-type) family protein (.1), CwfJ-like family protein / zinc finger (CCCH-type) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04676 [flax] [poplar] CwfJ_C_2 Protein similar to CwfJ C-terminus 2 CL0265 [flax] [poplar] HIT PF04677 [flax] [poplar] CwfJ_C_1 Protein similar to CwfJ C-terminus 1
Representative CDS sequence Show only first row Show all	>Lus10008172 pacid=23173791 polypeptide=Lus10008172 locus=Lus10008172.g ID=Lus10008172.BGIv1.0 annot-version=v1.0 ATGGAGGCACAACGAGGCGGAGACGATCTCCCTACATCTGCACTTGTTGGAGATGCCGGTGCTAGCTGGAGGCTGAAAGCCCTAAAGCGCGCAGAAGAAC AAGCAGCTAGAGACGGCCGGACAGTAGCCGAGGTGGTGGAAGAAAGGGGGGGATCTCTTGGTCAATTGGTTGCTTCTGCTGCATCTCACAGGGCAGCACC ATCTCGTGCTCATCTACATGCCATCAGAAGTAGACAACAACTGACCACGAATCAGAAATATGAGGAACAACAACGACCTTCCACTGATGGTCAACACGGA CAGAATCCTGACAGGATTTACTTGAAGGATAATTCTAATCGCCATCGTGAGATGAAAGCCCCTAAAGTCCATGTCTCCTTATCTTGGGGGAAGCGGAAAA CTCCAGAGCTATCTACCTACGATGCAAGCATTATATCCAGAGCAGCCTCTAGCTTAAATAAGTTTGCCAATGATGGCAACTTCATGAACCAATTCCTTGA TCAGGCTAGTGATTTGGCTAGTTCAAATGCAAAACTAGAGCAAATGGTTCAACCACAGATTGCTACAAGTGCTAACAGCAGGTATGTTGCACATCACTCC AACACTCAAAAGAAGGATGCTGACGATGCGGACAAAGAATTAGCCAGAACCATAATGCAGAACAAACAATATAGCTTATCAGGCCGTGCTGATGATGAGT ACGATTTTGAGGGTGGCCCCCCAAGAAAGAAACCATGTAAGAAGGAGAAAGGCAAAGATTGGAAATCTGGGAATAACAGTCTTCGTATCAGCAGCATCAT GACACAGCAACAACGCTGTCTGTTTTGCTTTGAGAATCCAAATACATCAAAAGATTCAGTTTTGTCAATAGCAAACTTCACATATTTGATGTTGCCTCGC ACGAAGCCAGTCGTACCAGGCCATTGTTGCATCTTATCGTTACAGCATGAATCGTGTACAATGAGTTTAGACGATATGGTATGGGAGGAGATTCGGAATT TCAAGAAATGCCTGATAATGATGTTTGCAAAGCAAGGCAAAGAGGTAGTGTTTCTTGAAACGGTGATGGATTTGGACAAACAGCGCAACCATTGTTTAGT TGAGTGCATCCCTTTGCCACAAGATGTCGCTAAACAAGCCCCTCTTTATTTCAAAAAGGCAATCGTAGATGCTGAGAAGGACTCGACTCAGCACGCTGCG AAAAAGCTGATCGACACGAGCGTAAAGGGGCTGCGAGGATCTATTCCCAAGAACTTCCCATATGTCCATGTTGAATTTGGATCGAAGAAAGGGTTTGCTC ATGTGATTGACAAGGAGCATAAGTTTGAAAGAAGCCTCGGTCTCAATGTTATAAGAGGGATGATGCATCTACCGGAGGAAGACATGTATCGACGCAGAAG ACTTGAGTCGGTACAACGACAGAAGATGGCAGTTACAGAATTTGACCGAGATTGGAAGCCTTTCGACTGGACCAGACAACTCGGTCTCTAG
AA sequence Show only first row Show all	>Lus10008172 pacid=23173791 polypeptide=Lus10008172 locus=Lus10008172.g ID=Lus10008172.BGIv1.0 annot-version=v1.0 MEAQRGGDDLPTSALVGDAGASWRLKALKRAEEQAARDGRTVAEVVEERGGSLGQLVASAASHRAAPSRAHLHAIRSRQQLTTNQKYEEQQRPSTDGQHG QNPDRIYLKDNSNRHREMKAPKVHVSLSWGKRKTPELSTYDASIISRAASSLNKFANDGNFMNQFLDQASDLASSNAKLEQMVQPQIATSANSRYVAHHS NTQKKDADDADKELARTIMQNKQYSLSGRADDEYDFEGGPPRKKPCKKEKGKDWKSGNNSLRISSIMTQQQRCLFCFENPNTSKDSVLSIANFTYLMLPR TKPVVPGHCCILSLQHESCTMSLDDMVWEEIRNFKKCLIMMFAKQGKEVVFLETVMDLDKQRNHCLVECIPLPQDVAKQAPLYFKKAIVDAEKDSTQHAA KKLIDTSVKGLRGSIPKNFPYVHVEFGSKKGFAHVIDKEHKFERSLGLNVIRGMMHLPEEDMYRRRRLESVQRQKMAVTEFDRDWKPFDWTRQLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56290			CwfJ-like family protein (.1)		Lus10008172 [exp]	0	1
AT5G45180			Flavin-binding monooxygenase f...		Lus10023942 [exp]	6.6	0.7675
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007564 [exp]	12.9	0.8089
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	15.2	0.6960
AT1G59970			Matrixin family protein (.1)		Lus10037418 [exp]	15.5	0.7294
					Lus10041024 [exp]	18.8	0.8005
AT4G03010			RNI-like superfamily protein (...		Lus10033744 [exp]	24.2	0.8005
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10018624 [exp]	26.5	0.7997
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10020083 [exp]	26.6	0.7938
AT1G78780			pathogenesis-related family pr...		Lus10027315 [exp]	26.8	0.6367
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	30.0	0.7958

Compare expression of checked genes

Lus10008172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.