Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06730 405 / 2e-141 Peroxidase superfamily protein (.1) AT5G06720 395 / 5e-138 ATPA2 peroxidase 2 (.1) AT2G38380 384 / 3e-133 Peroxidase superfamily protein (.1) AT3G49120 376 / 5e-130 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT3G49110 375 / 1e-129 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G08770 374 / 2e-129 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT2G38390 372 / 2e-128 Peroxidase superfamily protein (.1) AT3G32980 370 / 1e-127 Peroxidase superfamily protein (.1) AT4G08780 363 / 3e-125 Peroxidase superfamily protein (.1) AT4G36430 316 / 1e-106 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027984 [exp] 643 / 0 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 559 / 0 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008167 [exp] 546 / 0 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008174 [exp] 493 / 4e-176 AT5G06730 382 / 2e-132 Peroxidase superfamily protein (.1) Lus10008168 [exp] 490 / 7e-175 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10027983 [exp] 489 / 1e-174 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10004163 [exp] 376 / 2e-130 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10025535 [exp] 321 / 5e-107 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1) Lus10026748 [exp] 317 / 5e-107 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 452 / 4e-160 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.001G013000 [exp] 442 / 4e-156 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214800 [exp] 441 / 1e-155 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.001G011300 [exp] 437 / 2e-154 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011200 [exp] 436 / 5e-154 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 434 / 3e-153 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 431 / 9e-152 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G214900 [exp] 426 / 6e-150 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.003G215001 [exp] 419 / 6e-147 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.016G058200 [exp] 397 / 1e-138 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008173 pacid=23173793 polypeptide=Lus10008173 locus=Lus10008173.g ID=Lus10008173.BGIv1.0 annot-version=v1.0 ATGGCTTCATTATTTCTCAACAAGTTTGTGGTTTCGTCGTTGGTGGCGATGCTATTATTCGCTGGAGCGAGCTACGCGCAGCAGCTTACTCCTACGTTCT ACGACTCGACTTGTCCGAACGTTATCGGCATCGTCCGTACAGTTCTTCAGAATGCTGCCATGGCCGATCCGAGAATCGGTGCCAGCCTCAACAGGCTTCA CTTCCATGATTGCTTTGTTAATGGATGTGATGGATCTCTGTTGCTGGACAACAGCGCCACCATACTAAGCGAGAAACAGGCGCTTGGCAACAACAACTCC GTTAGAGGGTTCGACGTCGTGGACCAAATGAAGACCCAAGTCGAAGCTGCTTGCCCCGGGGTTGTTTCTTGTGCCGATATTCTCGCCATCGCTTCTGAGG AATCCGTTGTTTTGGCAGGAGGGCCGTCATGGGCAGTTCCATTGGGGAGGAGAGACAGCTTGACAGCAAACCGGAGTCTAGCAGATGACCAACTTCCTCC TCCATTTTTCACCGTCGATGAGCTCAAAGCTAATTTCGCTACCGTTGGCCTCAACACCACCGAAGACCTCGTTGCTCTCTCAGGTGCTCACACATTCGGA AGGGCCCGATGCGTAGGATTCGTGGGCCGGCTCTACAACTTCAACAGCACGGGCGGCCCAGACCCAACAATCAACGCCACATTCCTCGAAACACTCCGCC AGATCTGCCCTCAGAACGGAAACGGCAGCGTTTTGACCAACCTCGACCGGACAACTGCCGACGCTTTCGATTCGAACTACTTCACCAATCTCCAGACCCG TGAAGGACTCCTCCAGACTGACCAGGAACTGATCTCCACTCCAGGCTCCGACACTATTGAGCTCGTCAACAGGTTCGCCGCCAACCAGACGGCCTTCTTC CAGAGCTTTGTCAATTCCATGATTAGGATGGGGAACATTCCGCCTCCGCCCGGGAGTCCCAGTGAGATTAGGCGGAATTGCAGGGTCGTGAACTCTGCCT CCGTTGCTGATACGATTGTTACTACTACTACTACTCCGACGGGTTCTGTTGGTACGGATGGGTTTGCGAGTGACATGTAG
AA sequence Show only first row Show all	>Lus10008173 pacid=23173793 polypeptide=Lus10008173 locus=Lus10008173.g ID=Lus10008173.BGIv1.0 annot-version=v1.0 MASLFLNKFVVSSLVAMLLFAGASYAQQLTPTFYDSTCPNVIGIVRTVLQNAAMADPRIGASLNRLHFHDCFVNGCDGSLLLDNSATILSEKQALGNNNS VRGFDVVDQMKTQVEAACPGVVSCADILAIASEESVVLAGGPSWAVPLGRRDSLTANRSLADDQLPPPFFTVDELKANFATVGLNTTEDLVALSGAHTFG RARCVGFVGRLYNFNSTGGPDPTINATFLETLRQICPQNGNGSVLTNLDRTTADAFDSNYFTNLQTREGLLQTDQELISTPGSDTIELVNRFAANQTAFF QSFVNSMIRMGNIPPPPGSPSEIRRNCRVVNSASVADTIVTTTTTPTGSVGTDGFASDM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06730			Peroxidase superfamily protein...		Lus10008173 [exp]	0	1
AT4G29990			Leucine-rich repeat transmembr...		Lus10038251 [exp]	6.8	0.9182
AT4G14746			unknown protein		Lus10039368 [exp]	8.4	0.9259
AT5G06740			Concanavalin A-like lectin pro...		Lus10021060 [exp]	16.2	0.8954
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Lus10004958 [exp]	24.6	0.8966
AT2G45220			Plant invertase/pectin methyle...		Lus10027202 [exp]	29.2	0.9169
AT1G01490			Heavy metal transport/detoxifi...		Lus10027523 [exp]	30.0	0.8895
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	30.2	0.8893
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020493 [exp]	34.1	0.8933
AT2G41480			Peroxidase superfamily protein...		Lus10020422 [exp]	36.9	0.8841
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10036930 [exp]	43.6	0.8339

Compare expression of checked genes

Lus10008173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.