Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06730 352 / 1e-120 Peroxidase superfamily protein (.1) AT2G38380 337 / 6e-115 Peroxidase superfamily protein (.1) AT3G49110 336 / 2e-114 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT5G06720 335 / 2e-114 ATPA2 peroxidase 2 (.1) AT3G49120 332 / 1e-112 PRX34, PRXCB, ATPERX34, PERX34, ATPCB PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) AT2G38390 331 / 2e-112 Peroxidase superfamily protein (.1) AT3G32980 329 / 1e-111 Peroxidase superfamily protein (.1) AT4G08770 316 / 2e-106 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT4G08780 314 / 6e-106 Peroxidase superfamily protein (.1) AT4G36430 285 / 1e-94 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027983 [exp] 607 / 0 AT5G06730 370 / 2e-127 Peroxidase superfamily protein (.1) Lus10027984 [exp] 471 / 3e-167 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 462 / 5e-164 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10008173 [exp] 458 / 3e-162 AT5G06730 407 / 3e-142 Peroxidase superfamily protein (.1) Lus10008167 [exp] 456 / 3e-161 AT5G06720 399 / 3e-139 peroxidase 2 (.1) Lus10008168 [exp] 429 / 6e-151 AT5G06720 393 / 5e-137 peroxidase 2 (.1) Lus10004163 [exp] 310 / 2e-104 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10026748 [exp] 287 / 2e-95 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10025535 [exp] 288 / 3e-94 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G214700 [exp] 387 / 2e-134 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.003G214800 [exp] 385 / 8e-134 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.001G011200 [exp] 377 / 1e-130 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G012901 [exp] 372 / 9e-129 AT5G06730 387 / 1e-134 Peroxidase superfamily protein (.1) Potri.001G011300 [exp] 372 / 2e-128 AT3G49120 410 / 8e-144 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.001G011000 [exp] 371 / 3e-128 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.003G215001 [exp] 367 / 2e-126 AT5G06720 389 / 1e-135 peroxidase 2 (.1) Potri.003G214900 [exp] 363 / 4e-125 AT4G08780 400 / 6e-140 Peroxidase superfamily protein (.1) Potri.001G013000 [exp] 361 / 3e-124 AT3G49120 407 / 2e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1) Potri.016G058200 [exp] 338 / 1e-115 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10008174 pacid=23173785 polypeptide=Lus10008174 locus=Lus10008174.g ID=Lus10008174.BGIv1.0 annot-version=v1.0 ATGCCTGCTAAGTTTCTAGTTTCTTCTTTGATGGCATTATTAATGCTGGTTTCTGCTGGTCGTCGGAGCTATGCACTGGAGCTTACTCCGACGTACTACG ACTCGACTTGTCCCGCTGTTACAAACATCGTCCGTCGGGTCATCGAAAATGCTGCCGTGGCTGATCCCAGGATTTGTGCCAGCCTCATTAGGCTTCACTT CCACGATTGCTTCGTTAGTGGATGTGATGCATCACTGTTGTTGGACAACAGTCCGACGATATTAAGCGAGAAAGAAGCGGCTGGTAATAACAACTCTTGT AGAGGGTATGAAGTCATTGATCAAATGAAGACCCAAGTCGAGGATGCTTGTCCAGGGGTCGTTTCATGCGCCGACATTCTCGCCATCGCCGCCGAAGAAG CTGTTGTTTTGGCAGGAGGGCCATCATGGGCGGTCCCACTCGGAAGGCTAGACAGCTTGACGGCGAACGAAAGGAGTCTAGTAACTTCATCACTTCCTCA TACGAATTACACCGTCGATGAGCTCAAAGCTAATTTCGCCGCCGTCGGCCTCAACACCACCGTCGACCTCGTTGCACTCTCAGGTGCTCACACGTTCGGG AGGGTCCAGTGCAAAGGATTCAAGCTGCGACTCTACAACTTCAACAACACGGGAGGCCCAGACCCAACACTGAACGCCACGTTGCTCCGCTCGCTCCGCC AGCTGTGCCCTCAGGACCGCAACGACATCGTTTTCACGGACCTCGACAAAACAACCCCCGACGCATTTGACTCGGCCTACTTCAGAAACCTTCAGAGAGG AGAAGGAATCATCTGGAGCGACCAGGTCCTCTTCTCCGCTCCGGGTTCCGACACTGTTGACATTGTCAACCGGTTCGCAGCCAACGAGACGACCTTCTTT GAGAGCTTTGTCGATTCGATGATTAGGATGGGGAACATTGCGCCTCCGGCGGGGAGTCCGGGTGAGATTCGGCGGAATTGCAGAGTTGTTAACTCCGCCT CCTTAGCCGGTAAGATTAGTGCTACTCCGGCTGGTTCTGTTAATACGGATGGTTTTGCGAGTGACGCTTGA
AA sequence Show only first row Show all	>Lus10008174 pacid=23173785 polypeptide=Lus10008174 locus=Lus10008174.g ID=Lus10008174.BGIv1.0 annot-version=v1.0 MPAKFLVSSLMALLMLVSAGRRSYALELTPTYYDSTCPAVTNIVRRVIENAAVADPRICASLIRLHFHDCFVSGCDASLLLDNSPTILSEKEAAGNNNSC RGYEVIDQMKTQVEDACPGVVSCADILAIAAEEAVVLAGGPSWAVPLGRLDSLTANERSLVTSSLPHTNYTVDELKANFAAVGLNTTVDLVALSGAHTFG RVQCKGFKLRLYNFNNTGGPDPTLNATLLRSLRQLCPQDRNDIVFTDLDKTTPDAFDSAYFRNLQRGEGIIWSDQVLFSAPGSDTVDIVNRFAANETTFF ESFVDSMIRMGNIAPPAGSPGEIRRNCRVVNSASLAGKISATPAGSVNTDGFASDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06730			Peroxidase superfamily protein...		Lus10008174 [exp]	0	1
					Lus10018556 [exp]	1.4	0.9236
AT2G39415			F-box family protein (.1)		Lus10042304 [exp]	8.1	0.9162
AT1G62422			unknown protein		Lus10031521 [exp]	13.8	0.9114
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018378 [exp]	14.5	0.8905
AT3G06880			Transducin/WD40 repeat-like su...		Lus10017257 [exp]	15.5	0.9095
AT2G36430			Plant protein of unknown funct...		Lus10020561 [exp]	15.7	0.9191
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010800 [exp]	19.2	0.8611
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	28.1	0.9157
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	28.4	0.8757
AT3G53810			Concanavalin A-like lectin pro...		Lus10003224 [exp]	34.3	0.9095

Compare expression of checked genes

Lus10008174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.