Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48060 1782 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027982 [exp] 1156 / 0 AT2G48060 1580 / 0.0 unknown protein Lus10000212 [exp] 965 / 0 AT2G48060 1077 / 0.0 unknown protein Lus10035352 [exp] 751 / 0 AT2G48060 720 / 0.0 unknown protein Lus10035351 [exp] 493 / 2e-153 AT2G48060 862 / 0.0 unknown protein Lus10029973 [exp] 360 / 4e-108 AT2G48060 614 / 0.0 unknown protein Lus10027981 [exp] 295 / 7e-92 AT2G48060 239 / 1e-73 unknown protein Lus10029968 [exp] 254 / 2e-77 AT2G48060 241 / 6e-74 unknown protein Lus10029972 [exp] 229 / 1e-63 AT2G48060 422 / 1e-130 unknown protein Lus10029967 [exp] 138 / 3e-38 AT2G48060 126 / 3e-35 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137200 [exp] 1952 / 0 AT2G48060 3339 / 0.0 unknown protein Potri.005G037700 [exp] 1606 / 0 AT2G48060 2623 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12166 [flax] [poplar] Piezo_RRas_bdg Piezo non-specific cation channel, R-Ras-binding domain
Representative CDS sequence Show only first row Show all	>Lus10008175 pacid=23173761 polypeptide=Lus10008175 locus=Lus10008175.g ID=Lus10008175.BGIv1.0 annot-version=v1.0 ATGTTGAATGCTGCTGTTAAACTGGTCATGATCATCGCCAGCCTTAGTATCTGCTGCTTGCTTGTCTCATTGGAGACTATTGCTCACAGAGTTCAGTCAT GGAAATCACCCTATGCAATCTATTTCTTGGTTGTACAGCTATTAGCAGTTTCTGCTGCTCTAATTGATGTATACGGGAATCAATATGGTCTGGTTCCATG GCGAGATTCTGCATGGGCTCGTTTGTTGACTGCTTTTGAGCATTTAGGTTTGTGGTGGAGGACCCTTCAGCTGTACGCTGGCTTCAATATTTTAATACTT TATGTCTATCAGCTCCCTTTCGAGTTCCCAAGTATGCTTACCTGGATAGCTGACTTTATTGGTCTATTCAAAATATCCGGAAGTTTGGAGGGGACCGCAG TTTGTTCTGGTGTTTCTCTCATACTCTATTACATCATGCTATCTTTTGTTAAGAGTGATTTGGAGGAAATGGATAGCATCCTCTCGGTGAGAGAAGGGAA TTTGACAGAGCCACTTCTTCCCTTGCGACATTCTTTTTTCATCCGCGAATCAAGATCTGGCGTCAGGCATACCAATGTCTTACTCAGGGGAGCAGTTTTC CGGACTTTTAGCATCAACTTTTTCACATATGGTTTTCCGGTATCTTTGTTTGCTCTGTCCTACTGGAGCTTCCATTTTGCCAGTCTATGTGCATTTGGGT TGCTTGCATACGTCGGCTACATTATCTATGCTTTCCCTTCAGTGTTCCGTTTACACCGGTTAAATGGTCTCGTTCTTGTCTTCATTCTCCTTTGGGCTGT GAGCACATATGTCTTCAATGTTGCTTTTGCACTCTTGACTGGGAAACTTGGAAAGGATATGAAGATATGGGAGATGGTTGGTTTGTGGCATTATTCCATC CCGGGTTTATTTTTATTTGCACAATTTTGTCTTGGAATGTTGGTTGCTTTGGGCAATCTGGTCAACAATTCTGTCTTCCTCCACTTGTCTGATGAGAGTT ATCAGTCTCCACTAGACAATTCAACAATCGAAGAGGAAGAGGGTACCAAGGTTTTGATTGTGGCTACTATTGCTTGGGGACTGCGGAAGTGCTCTCGAGC TATTATGCTGGCCATGATATTCCTGATTGCTATGAAACCTGGTTTCGTTCATGCAGTATATGGTCTTCTCAAACGTGATAGCTCCTGGGAGTTGTTGGAA ATTGCTCTTCTTGCTTGCTTCTGTGCCATTCATAATCATGGGTTTGATATGCTATTTTCATTTTCGGCCATCGTGCAACACACCCCTAGCGCTCCTCTTG GATTTAGCATTTTGAAAGCTGGTCTCAGTAAATCAGTCCTCTTGACGGTGTATGCTTCACCAAGGAGCAAGTATGGCCAGGACAATACCTATGAGAGTAG GATCGCAACCTTTCTTAGTGCAATTGGCCAGAAGTTCCTTACCATGTATCGCTCCTGTGGTATTGTTGTGGATGATCCACGAATGCTCATCAGCTATTTT GCAGTGTTCACTTTGGCCTGTTTCAAACTTCGGGCTGATCGCTTGTCCAGTTTCTCTGGCTCATCAACATATCGCCAAATGCTGTCGCAACGTAAAAACA CGTCTGTTTGGAAGGATCTCTCTTTTGACAAAAGCATGTGGACTTTTCTTGATTACGTGAGGGTTTACTGCTATTGCCATCTGCTAGATCTTGTGCTTTG CCTGATTCTGATAACTGGGACTCTTGAGTACGACATTCTGCATCTTGGTTATCTTGCATTTGCTCTGGTTTTCTTCCGGATGCGGCTTGTAATGCTCAAA AAGAAGAACAAAATATTCAAGTACCTGCGCATATACAACTTTGCTGTTATAGTACTTTCTCTTGCTTATCAATCTCCTTTCTTGGGTGTGTTCAGCTCTG GGAAATGTGAGACAATAGATTATGTGTTTGAGATCGTCGGGTTCTACAAGTATGATTATGGATTTCGGATTACCTCAAGATCTTCAATTGTTGAGATCAT TATATATATGTTGGTCTCCCTGCAGTTCTACATGTTTGCCTCTCTTGAGTTTGATCATGTTGCTAGATATCTTGAGGCGGAGCAAAGTGGTGCCGTTATG CGTGAGGAAGAGAAGAAAGCTGCATGGAAAACTGCACAGTTAAAACATATTCGGGAATCTGAGAAAAAAAAACACCAACGCCATTTGCAAGTGGAGAAGA TGAAATCTGAGATGCTTAATCTACAACGCCAGCTACATAGTGTTAATTCCACTGGTAATTGCAGTGCGACATCCTCCGACAGGGAAGGCCTAAGGAAAAG GAAGAATGCTCATCTTCCCTTAGACAGGGATCCTAAGAGCTTTGTAAAACTCGAAACAGCCCTTGGAAAGCAAGAGCAAGTCTCTAAAGAGGACTCGTTT CTGCCTGAAGTGAATGAGTATTCGGCTGATTTAAATTCAGAAGATAAAGCAGCAGCAATATCTCCAAAGCATACACTAGATCCTCCTCTTCCCGAAAGTT CTCCTTTTTGTGAGATTACTGAGGTCATACATGAATCATCTGATAGCATACTTTTTGACTCTGGTAAAAAAGAGAAAATCCCATCCAAGGAACATCCATT GATTTCTGCTGTCCAGCTAATAGGGGATGGGGTTTCTCAGGTTCAGTCAATAGGAAATCAAGCAGTTAATAACCTTGTGACGTTCTTGAACATTTCACAT GAAGATTTGAACAGTAGTGAGCATTCTGGCGAGGAAGAAGGATATAAGGATCAAAAGGTGAACAGTGTGAGCTTGGACCGTACATCATCTATTCAGTCAG ACACGAGTACTGATGCTACTAGTTTGCAGATAGGGCGCATCCTTTGCCATATATGGTCCCAGATGCGGTCTAACAATGACATTGTCTGCTATTGTTGCTT TGTTATTGTGTTTTTATGGAACTTCAGCTTGCTTTCAATGGGGTACCTTGCAGCTCTCTTCTTATATGCACTCTGTGTAAATACAGGGCCAAGCTACATC TTTTGGGTTATCATGCTTATTTACACAGAAGTCTACATATTGCTCGAGTATATGTACCAAATTATCATCCAGCATTGTGGCTTTAAAATCAATCTGGTTG GACTGCGTGAGCTGGGGTTTCCGGCCAATAAAATTGAGTCCTCTTTTGTCATCAGTTCTTTGCCTCTGCTTCTTGTCTATTTATTTACCCTCCTTCAGAG TTCTATAACTGCAAAAGATGGTTTGCCCTCTATGGAGCTCATGTCCAGAAGAAGAGCTGCTTTACACAGGGCAGAGGCTACAGTGAGCCATAACTGGAGT GAAAGAGCTATGGAGCTTTTTCATGTAATGGGAGATACAGTTAAATTGATAGCTAGAGGCATCTTTAGGTATTGGGGGTCACTTACGCGGGGAGCAGAAT CTCCTCCTTATCTTGTCCAGGTGTCTCTGGATGTCCAGTCATGGCCTGAAGATGGGATTCAGCCAGAGAATATTGAATCTGGAATAAACCGACTGCTTAA AGTCATTGATGGTGAGAGATGCAAGGCTAATGTATGCCCATTTGCTAGTACGGTTCATGTTCAGAGCATTGAAACAAGTCAAGAAGATTCAACCTTGGCC TTGGTTGTTTTAGAAGTGGTATATGCCTCTCCTTTGACATCATGTGTATCAGCACACTTGTACAAGTCACTCACTCCGGCAGCTGATGTGGCAAAGGAAA TTCAGCAAGCAAAAGATGATGGATTTGTTGAAGAAATCAGATTTCCATATCCTATTCTCTCCGTGATTGGGGGAGGGAAAAGAGAAATTGATTTGTATGC CTATGTATTTGGTGCCGATCTCAGTGTGTTCTTCTTGGTTGCAATGTTCTATCAATCTGTCATTAAGAACAAGAGTGAATTTATTGATGTCTACCAGCTT GAAGACCAGTTTCCGAAAGAATATGTGTTTGTCTTGATGGTTGTCTTTTTTCTGATCGTTCTCGACCGGATAGTTTACCTCTGTTCATTTGCGGCCTTGA AGTTGATCTTCTACATTTTCAACCTTATTCTCTTCACCTATTCAGTTACAAAATATGCTTGGAGCTTGGAACCTTCCCAAGAACATTCAGCAGGGATCAT CCTTCGTGCTATATTTCTGGCTAAAGCAGTTTCACTGGCACTGCAAGCCATCCAAATTCGCAATGGACTTCCTCATAAAAGCACCTTGTATCAACAGTTT TTGACCAGCAAGGTCAATCGGATCAATTATATAGGCTACAGGCTTTATCGTGCTCTGCCTTTCCTTTACGAGCTGCGATGTGTATTAGACTGGTCATGTA CAACAACATCTTTGACCATGTATGACTGGTTAAAGTTGGAGGACATACATGCTAGTCTTTACCTTGTCAAGTGTGACGCAGTGTTGAACAGAGCTACACA CAGACAAGGCGATAAGCAGACAAAGTGGACCAAATGTTGCAATGGGATCTGCCTTTTCTTCATATTGCTTTGTGTTATTTGGGCCCCCATGCTGATTTAC AGCAGCGGTAACCCTACAAATATTGCAAACCCCATTAAAGACGCTCGAGTTCAGATTGATATCAAGACATATGGTGGAAGGTTGACTTTGTATCAAACTA CTCTCTGTGAGAAACTTGACTGGGAGCACGTCAACTCGGCTGCTAATCTGGATCCACGTGGTTATCTAGATGCATACAACAACGATGATATCCAGTTAGT TTGCTGCCAACCAGATTCCAGTGTGTTATGGCTAGTCCCTGATGTGGTTCAGAATAGATTTATCCAGTCTCTTGACTGGGAGATGGAAATGGATATTGTG TTCATTTGGGTACTAACTAGAGACAGACCAAAAGGCAAGGAAGTCGTGAGGTACGAGAGGGTCGTTGATCCTCTGGATCTTCCAGCACGATCGGATGTAC AGAAAGTTCTCAATGGTTCCGCTAACAGCTTTAGGATATATAACGTCTACCCGAGATACTTTCGAGTCACCGGCTCTGGTGATGTCAGGCCTTTCGAACA AGAGGTAAATTCAGTTAGTGCGGATCTCATCCTGAACCGTGGAAATTTCAGCTGGTGGATGTTCTATGACGTCAATTCGACGGATGTAGGCGGCTGTGGA GGCTTGACTGGACCCACAGCCATCATAGTATCTGAGGAAACCCCACCACAGGGTATCCTTGGTGACACCATTAGCAAGTTCAGCATCTGGGGTCTCTACA TTACCTTTGTGCTTGCCGTGGGTCGATTCATCAGGCTGCAGTGTTCCGACTTGAGAATGAGAATACCGTACGAGAATCTACCATCCTGCGACAGGTTGAT AGCCATATGTGAGGACATTTATGCTGCAAGAGCAGAAGGTGAGCTTGGAGTCGAAGAAGTTCTTTACTGGACACTCGTAAAGATATATCGGTCGCCACAC ATGCTTCTCGAGTACACAAAACCAGACTAG
AA sequence Show only first row Show all	>Lus10008175 pacid=23173761 polypeptide=Lus10008175 locus=Lus10008175.g ID=Lus10008175.BGIv1.0 annot-version=v1.0 MLNAAVKLVMIIASLSICCLLVSLETIAHRVQSWKSPYAIYFLVVQLLAVSAALIDVYGNQYGLVPWRDSAWARLLTAFEHLGLWWRTLQLYAGFNILIL YVYQLPFEFPSMLTWIADFIGLFKISGSLEGTAVCSGVSLILYYIMLSFVKSDLEEMDSILSVREGNLTEPLLPLRHSFFIRESRSGVRHTNVLLRGAVF RTFSINFFTYGFPVSLFALSYWSFHFASLCAFGLLAYVGYIIYAFPSVFRLHRLNGLVLVFILLWAVSTYVFNVAFALLTGKLGKDMKIWEMVGLWHYSI PGLFLFAQFCLGMLVALGNLVNNSVFLHLSDESYQSPLDNSTIEEEEGTKVLIVATIAWGLRKCSRAIMLAMIFLIAMKPGFVHAVYGLLKRDSSWELLE IALLACFCAIHNHGFDMLFSFSAIVQHTPSAPLGFSILKAGLSKSVLLTVYASPRSKYGQDNTYESRIATFLSAIGQKFLTMYRSCGIVVDDPRMLISYF AVFTLACFKLRADRLSSFSGSSTYRQMLSQRKNTSVWKDLSFDKSMWTFLDYVRVYCYCHLLDLVLCLILITGTLEYDILHLGYLAFALVFFRMRLVMLK KKNKIFKYLRIYNFAVIVLSLAYQSPFLGVFSSGKCETIDYVFEIVGFYKYDYGFRITSRSSIVEIIIYMLVSLQFYMFASLEFDHVARYLEAEQSGAVM REEEKKAAWKTAQLKHIRESEKKKHQRHLQVEKMKSEMLNLQRQLHSVNSTGNCSATSSDREGLRKRKNAHLPLDRDPKSFVKLETALGKQEQVSKEDSF LPEVNEYSADLNSEDKAAAISPKHTLDPPLPESSPFCEITEVIHESSDSILFDSGKKEKIPSKEHPLISAVQLIGDGVSQVQSIGNQAVNNLVTFLNISH EDLNSSEHSGEEEGYKDQKVNSVSLDRTSSIQSDTSTDATSLQIGRILCHIWSQMRSNNDIVCYCCFVIVFLWNFSLLSMGYLAALFLYALCVNTGPSYI FWVIMLIYTEVYILLEYMYQIIIQHCGFKINLVGLRELGFPANKIESSFVISSLPLLLVYLFTLLQSSITAKDGLPSMELMSRRRAALHRAEATVSHNWS ERAMELFHVMGDTVKLIARGIFRYWGSLTRGAESPPYLVQVSLDVQSWPEDGIQPENIESGINRLLKVIDGERCKANVCPFASTVHVQSIETSQEDSTLA LVVLEVVYASPLTSCVSAHLYKSLTPAADVAKEIQQAKDDGFVEEIRFPYPILSVIGGGKREIDLYAYVFGADLSVFFLVAMFYQSVIKNKSEFIDVYQL EDQFPKEYVFVLMVVFFLIVLDRIVYLCSFAALKLIFYIFNLILFTYSVTKYAWSLEPSQEHSAGIILRAIFLAKAVSLALQAIQIRNGLPHKSTLYQQF LTSKVNRINYIGYRLYRALPFLYELRCVLDWSCTTTSLTMYDWLKLEDIHASLYLVKCDAVLNRATHRQGDKQTKWTKCCNGICLFFILLCVIWAPMLIY SSGNPTNIANPIKDARVQIDIKTYGGRLTLYQTTLCEKLDWEHVNSAANLDPRGYLDAYNNDDIQLVCCQPDSSVLWLVPDVVQNRFIQSLDWEMEMDIV FIWVLTRDRPKGKEVVRYERVVDPLDLPARSDVQKVLNGSANSFRIYNVYPRYFRVTGSGDVRPFEQEVNSVSADLILNRGNFSWWMFYDVNSTDVGGCG GLTGPTAIIVSEETPPQGILGDTISKFSIWGLYITFVLAVGRFIRLQCSDLRMRIPYENLPSCDRLIAICEDIYAARAEGELGVEEVLYWTLVKIYRSPH MLLEYTKPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48060			unknown protein		Lus10008175 [exp]	0	1
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10033549 [exp]	4.2	0.8882
AT1G55750			BSD domain (BTF2-like transcri...		Lus10007089 [exp]	6.2	0.8572
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Lus10017588 [exp]	8.2	0.8962
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10042959 [exp]	8.8	0.8802
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10035243 [exp]	11.3	0.8661
AT4G38120			ARM repeat superfamily protein...		Lus10008299 [exp]	12.4	0.8460
AT3G07160		CALS9, ATGSL10	glucan synthase-like 10 (.1)		Lus10032463 [exp]	13.2	0.8686
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Lus10000969 [exp]	15.3	0.8645
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	18.7	0.8753
AT1G15240			Phox-associated domain;Phox-li...		Lus10035877 [exp]	19.9	0.8134

Compare expression of checked genes

Lus10008175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.