Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63030 202 / 1e-66 MBD4 methyl-CPG-binding domain 4 (.1) AT4G22745 188 / 1e-60 MBD1 methyl-CPG-binding domain 1 (.1) AT5G35330 110 / 1e-29 MBD2, MBD02, ATMBD2 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) AT4G00416 97 / 2e-25 MBD3 methyl-CPG-binding domain 3 (.1) AT5G35338 71 / 1e-15 MBD12 methyl-CPG-binding domain 12 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027980 [exp] 343 / 7e-122 AT3G63030 206 / 4e-68 methyl-CPG-binding domain 4 (.1) Lus10029631 [exp] 241 / 2e-82 AT3G63030 208 / 1e-69 methyl-CPG-binding domain 4 (.1) Lus10042674 [exp] 239 / 2e-81 AT3G63030 207 / 4e-69 methyl-CPG-binding domain 4 (.1) Lus10021593 [exp] 108 / 3e-28 AT5G35330 283 / 1e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Lus10017146 [exp] 107 / 1e-27 AT5G35330 283 / 5e-95 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G137100 [exp] 231 / 7e-78 AT3G63030 223 / 4e-75 methyl-CPG-binding domain 4 (.1) Potri.002G212600 [exp] 225 / 1e-75 AT3G63030 221 / 3e-74 methyl-CPG-binding domain 4 (.1) Potri.006G077600 [exp] 105 / 3e-27 AT5G35330 257 / 6e-85 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G145500 [exp] 103 / 1e-26 AT5G35330 282 / 2e-94 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3) Potri.018G146700 [exp] 102 / 4e-26 AT5G35330 286 / 6e-96 METHYL-CPG-BINDING DOMAIN PROTEIN 2, methyl-CPG-binding domain protein 02 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger CL0081 [flax] [poplar] MBD-like PF01429 [flax] [poplar] MBD Methyl-CpG binding domain
Representative CDS sequence Show only first row Show all	>Lus10008176 pacid=23173756 polypeptide=Lus10008176 locus=Lus10008176.g ID=Lus10008176.BGIv1.0 annot-version=v1.0 ATGAAAGAGGACAACCAAGCAACTCCTATAGGAAGAGACAGAGAGCTTAGCGAAATGAAAGAGGACAACCAGGGAACTCCTTTGAGCTCGTCCAATTCCA AGAAGTCGCGTGGATCAGTCGACACGTACGCTGCGCAGTGCCACGAGTGCTTGAAATGGAGAGTGATGGCTACGGAGGAAGAGTACGAGGAAATCAGAAG CAAGAGCGGCTCGGAGAAGTTTACTTGCAAGGCGAGAGATCTTTCTTGCGACACCCCTGCTGAAATAGAGTACAACGCATCTCGGACATGGGTCATAGAC AAGCCTGGAGTTCCCAGAACCCCGAGGGGGTTCAGAAGGTACTTGGTGCTGAGACGAGACTTCTCCAAAATGGATGCTTACTATATCACTCCCACGGGCA AGAAACTCCGTACCAGGAACGAAATCGCAGCTTTCGTGCAGGCCAACCCGCAGTACAAAGATGTAAAGCTTGATGACTTCAACTTCACGTCTCCAAAGGT TATGGAAGATACTGTACCAGAGGACGCGAGGAAGAAAAGTGCTAGCGGCATCAGCAACAAGAAGAGTAAGATCTCAAAGGAAGATGCTTGA
AA sequence Show only first row Show all	>Lus10008176 pacid=23173756 polypeptide=Lus10008176 locus=Lus10008176.g ID=Lus10008176.BGIv1.0 annot-version=v1.0 MKEDNQATPIGRDRELSEMKEDNQGTPLSSSNSKKSRGSVDTYAAQCHECLKWRVMATEEEYEEIRSKSGSEKFTCKARDLSCDTPAEIEYNASRTWVID KPGVPRTPRGFRRYLVLRRDFSKMDAYYITPTGKKLRTRNEIAAFVQANPQYKDVKLDDFNFTSPKVMEDTVPEDARKKSASGISNKKSKISKEDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63030		MBD4	methyl-CPG-binding domain 4 (....		Lus10008176 [exp]	0	1
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10009234 [exp]	4.1	0.9722
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10004945 [exp]	5.3	0.9634
AT5G02570			Histone superfamily protein (....		Lus10040850 [exp]	6.2	0.9504
AT3G19300			Protein kinase superfamily pro...		Lus10014071 [exp]	8.8	0.9437
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	8.9	0.9654
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	9.3	0.9651
AT5G45590			Ribosomal protein L35 (.1)		Lus10010409 [exp]	9.4	0.9198
AT4G10890			unknown protein		Lus10001812 [exp]	12.0	0.9460
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Lus10026566 [exp]	12.1	0.9583
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Lus10007147 [exp]	12.7	0.9613

Compare expression of checked genes

Lus10008176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.