Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48030 459 / 1e-159 DNAse I-like superfamily protein (.1) AT3G21530 400 / 4e-136 DNAse I-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027979 [exp] 763 / 0 AT2G48030 479 / 3e-167 DNAse I-like superfamily protein (.1) Lus10042675 [exp] 553 / 0 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10029630 [exp] 535 / 0 AT2G48030 484 / 2e-169 DNAse I-like superfamily protein (.1) Lus10012772 [exp] 428 / 7e-147 AT3G21530 504 / 2e-177 DNAse I-like superfamily protein (.1) Lus10034003 [exp] 417 / 8e-142 AT3G21530 504 / 2e-176 DNAse I-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136900 [exp] 553 / 0 AT2G48030 516 / 0.0 DNAse I-like superfamily protein (.1) Potri.008G198100 [exp] 427 / 4e-146 AT3G21530 506 / 1e-177 DNAse I-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10008177 pacid=23173762 polypeptide=Lus10008177 locus=Lus10008177.g ID=Lus10008177.BGIv1.0 annot-version=v1.0 ATGTTTAAACTCCTCAACCACAAGCTCCGCCTCCTCTGTTCTCGCCTCCGCCGCCGCCGCCGCCGCCGCTCCTCCTCCAAGATTCAGATAAAGAAATTCG GCAGACCTGAACCAGTGATCATCGGTTCCACTTCTCCTTCTTCGGCTGCGGTTCATCCCAATAAAGCGGAGACAGAGTCGAATCGAATTAAAGTCGCGAC ATTTAACGCTGCTCTGTTCTCCATGGCTCCCGCTGTTCCCCCGGCGGAGAATTCATCCAATTTTGAGTCAGAATTCGGAAGGAGTAAAAGTTCACTAGAC GATAATTCTGGTAATAAAGATCGGCCGATCAAGAGCATATTAAAGCAGTCTCCCCTGCATCCGGTCTCCGTCAAACACGGAGACGGCAATCTCTCCAAGC AGCAGAGATTCGCCAAATCGAGGCTGAGGGTTTCAATTAATCTTCCCGACAACGAGATTTCGCTTTTGAGGAGCAGGAAATTGAGCTTCGGGGGAGAAGG CGAGGAAGAGTACTGCTGCAACGGCGGCGGCGGCGGAGGTGTGAAAGTTGGTACTAAAGCTCCGGTGGCGAGTCGGTGCCGGAGTTTGATTGAATTGGAG AGGTGCGGCGGCGGTGGGAAGAGGACGGTGGTGGAGGTTTTGAGAGAGTTGGACGCTGATATCTTGGCACTGCAGGAAGTGAAAGCAGAGGAAGAGAAAT CGATGAGGCCTCTGTCGGATTTGGCTGCTGCTCTGGGGATGAATTACGTTTTTGCGGAGAGCTGGGCTCCTGAATATGGAAATGCCATTCTGTCCAAGTG GCCGATCCAACAGTCCACAGCGCAGAAAATCGTCGACAATTCTGATTTCAGGAATGTTCTCAAGGCAACAATCAATGTGCCTAACATAGGGGAAGTCAAC TTCCACTGCACCCACTTGGATCATCTCGATGAGTCATGGAGGATGAAGCAAGTGAACGCGATCATGCAGTCGAGCGAAGGCCCCCACCTCTTGGCCGGAG GGCTCAATTCGCTCGACGAAACTGACTACTCTAAGGAGAGATGGACCGACATTGTAAAGTACTATGAAGAGATGGGAAAGCCGACGCCAAAGGCCGAAGT GATGAGGTTCTTGAAGAACAAACACTACACTGATGCCAAGGATTCTGCGGGTGAATGCGAGTCCGTCGTCATGATAGCCAAAGGCCAAAATGTTCAAGGG ACTTGCAAATACGGAACTCGGGTGGACTACATTGTGGCATCACCGAATTCGCCATACAAGTTTGTACCAGGGTCGTACTCGGTTCTATCTTCGAAGGGGA CATCTGATCATCACATTGTGAAAGTTGATGTTGTTAAAGTCCAATCCAGCAGCAGTAGTAGTGGTGAGCGTCATAGTAGTTACAGAGATCAGCAAAATGT GAGTAGAAAAGGCAAAACAAAGCACAAGAAACAATTGTGTTGTAACGTTTTAAGTTAG
AA sequence Show only first row Show all	>Lus10008177 pacid=23173762 polypeptide=Lus10008177 locus=Lus10008177.g ID=Lus10008177.BGIv1.0 annot-version=v1.0 MFKLLNHKLRLLCSRLRRRRRRRSSSKIQIKKFGRPEPVIIGSTSPSSAAVHPNKAETESNRIKVATFNAALFSMAPAVPPAENSSNFESEFGRSKSSLD DNSGNKDRPIKSILKQSPLHPVSVKHGDGNLSKQQRFAKSRLRVSINLPDNEISLLRSRKLSFGGEGEEEYCCNGGGGGGVKVGTKAPVASRCRSLIELE RCGGGGKRTVVEVLRELDADILALQEVKAEEEKSMRPLSDLAAALGMNYVFAESWAPEYGNAILSKWPIQQSTAQKIVDNSDFRNVLKATINVPNIGEVN FHCTHLDHLDESWRMKQVNAIMQSSEGPHLLAGGLNSLDETDYSKERWTDIVKYYEEMGKPTPKAEVMRFLKNKHYTDAKDSAGECESVVMIAKGQNVQG TCKYGTRVDYIVASPNSPYKFVPGSYSVLSSKGTSDHHIVKVDVVKVQSSSSSSGERHSSYRDQQNVSRKGKTKHKKQLCCNVLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48030			DNAse I-like superfamily prote...		Lus10008177 [exp]	0	1
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Lus10021461 [exp]	13.8	0.9185
AT1G15410			aspartate-glutamate racemase f...		Lus10014492 [exp]	15.8	0.8361
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10008534 [exp]	17.4	0.8969
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	21.0	0.9149
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10002191 [exp]	25.9	0.9025
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	32.1	0.9004
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Lus10018365 [exp]	33.2	0.8990
AT1G75880		EXL1	SGNH hydrolase-type esterase s...		Lus10034541 [exp]	38.0	0.8989
AT1G65090			unknown protein		Lus10020377 [exp]	43.6	0.8972
AT3G08610			unknown protein		Lus10010288 [exp]	47.0	0.8240

Compare expression of checked genes

Lus10008177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.