Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036312 [exp] 232 / 3e-70 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001304 [exp] 196 / 7e-58 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10042979 [exp] 98 / 3e-22 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10027612 [exp] 96 / 1e-21 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10009515 [exp] 86 / 1e-19 ND / Lus10001889 [exp] 83 / 3e-19 AT1G52950 42 / 6e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10023787 [exp] 83 / 3e-17 ND 44 / 3e-04 Lus10042671 [exp] 77 / 7e-16 ND 41 / 0.001 Lus10010590 [exp] 79 / 9e-16 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008178 pacid=23173760 polypeptide=Lus10008178 locus=Lus10008178.g ID=Lus10008178.BGIv1.0 annot-version=v1.0 ATGTTTCCCTCTTACTTTCAGAATTCAGATTACCACATCCTCAAACTCAAACAACTTGCTTCCACCTGCCGCCACCCCTCACTCCTCGCCACACTCCACA TGGCGATGATCCCTGTTCTTTTGCGCGATTTCAGAACCGATAATCTTGCCATCGAGCTCTACTTGCTGCTACTTAATGCATGGGATATTGGCGATCCCTC AAGACTTGCTACCGTCTATGGCTTTGGCACCCATTGGGTTGATGCCCAGGGGACCTCCATTCAGGGGGAGTCCCACAAAAACTTTGCTTTTGTCCTTCGG TCTCGAATCTATGTTGGCTCGGTGTACAAACTCGCAGGTTTTGACCTCCGAACCCCTAGGTGGAACTTTGGCACAAGCTCCTTCCCTTATTGTCTTGATT TGACCCCAACGACTCAATTCCAACTCCAACCACCAACTACGCCTCCATTCCTTGCCGATTCGTTGCAGTATATCGAGGTCAAAGCCCTCTCTGGCCGTTT TCACCCGCCATTTCCATATCTCACAGGTTGCTTTTGTCGGCCTCTTACTTTTCTTTTCTGCGTTTTCTCTACTTCCGATTTACTGCATCTTTATCGTATA GACATCGTCGGTAAAGTTGTGGCCGGTGGTGAACTGGATCATTACCAGCAGGTTCATCTATTACTCAATTTCCAGAAATTAACCATTGTTAATGAAAGGC TGGTTCTGCAGGTCCCTACTCCAGTTGTAGTCCCCCCATCAAGCCCTCCAAGTACTCATACCACACCTATGCCAGATGACCCCGAATATGTTGCTCCTGT GCCAACTTACACTCCCCCGGCGACATCACTATCTCATACCTCTCAGAAACTTCCATTGGATTCCTTTGGTCTGCCCCAGGCAGATAAGAAACCTTCGTCT TCGCGCAAGGCTAAGGGTTTATTCAAACTACCAAATCCTAAGTTTGTGTCCATCCAAATTTCATGCACTTTGCCTCCTTTTCACTATTTGATTGTCTTTT CAGGTCACCTTATTTGA
AA sequence Show only first row Show all	>Lus10008178 pacid=23173760 polypeptide=Lus10008178 locus=Lus10008178.g ID=Lus10008178.BGIv1.0 annot-version=v1.0 MFPSYFQNSDYHILKLKQLASTCRHPSLLATLHMAMIPVLLRDFRTDNLAIELYLLLLNAWDIGDPSRLATVYGFGTHWVDAQGTSIQGESHKNFAFVLR SRIYVGSVYKLAGFDLRTPRWNFGTSSFPYCLDLTPTTQFQLQPPTTPPFLADSLQYIEVKALSGRFHPPFPYLTGCFCRPLTFLFCVFSTSDLLHLYRI DIVGKVVAGGELDHYQQVHLLLNFQKLTIVNERLVLQVPTPVVVPPSSPPSTHTTPMPDDPEYVAPVPTYTPPATSLSHTSQKLPLDSFGLPQADKKPSS SRKAKGLFKLPNPKFVSIQISCTLPPFHYLIVFSGHLI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10008178 [exp]	0	1
AT5G10320			unknown protein		Lus10000634 [exp]	6.5	0.7756
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Lus10019710 [exp]	7.1	0.7235
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	8.9	0.7395
					Lus10033943 [exp]	9.2	0.7548
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	16.0	0.7366
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	16.9	0.7257
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10026886 [exp]	17.7	0.7352
AT2G41790			Insulinase (Peptidase family M...		Lus10042064 [exp]	20.9	0.7430
AT5G27230			Frigida-like protein (.1)		Lus10006522 [exp]	21.1	0.7468
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	23.0	0.7313

Compare expression of checked genes

Lus10008178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.