Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 590 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 502 / 1e-176 Major facilitator superfamily protein (.1) AT3G05150 489 / 1e-171 Major facilitator superfamily protein (.1) AT1G54730 461 / 1e-160 Major facilitator superfamily protein (.1.2.3) AT1G08930 390 / 2e-132 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08920 382 / 1e-129 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G19450 382 / 1e-129 Major facilitator superfamily protein (.1) AT3G05165 379 / 2e-128 Major facilitator superfamily protein (.1.2.3.4.5) AT3G20460 379 / 3e-128 Major facilitator superfamily protein (.1) AT1G75220 376 / 4e-127 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027975 [exp] 747 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 707 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 704 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 655 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 651 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 625 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 600 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 508 / 9e-179 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 479 / 2e-167 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 650 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 609 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 515 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 470 / 5e-164 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 395 / 9e-135 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.007G024300 [exp] 391 / 5e-133 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.005G037000 [exp] 390 / 1e-132 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 388 / 6e-132 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 385 / 1e-130 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.013G027800 [exp] 381 / 5e-129 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10008179 pacid=23173774 polypeptide=Lus10008179 locus=Lus10008179.g ID=Lus10008179.BGIv1.0 annot-version=v1.0 ATGATCAGCAAAAGCTTAAAGGATGATCTTACTACTCATCATGATGATGCTCCTACTGCACTTCTCAATGGAAAAGCTGGATTCTCTTCCCCAACGCAAG ATGCAATCACCCAAGATCTTTCACTATCTCTGGCCCAGTATTCAGTGTTTGGGTCCATTTTGACGTTTGGAGCAATGATCGGTGCTGCAGCTAGCGGATA TTTGGCTGATCACCTTGGTCGCAAAGGGGCGATGAGATTGTCGAGTGCCTTCTGCGTTGCTGGCTGGCTAGCCATTTACTTTGCTCAGGGAGCAGTGGCA TTGGACATTGGTAGATTGGCAACTGGATTTGGAATGGGAGTGTTCTCCTATGTGGTGCCAGTTTTCATATCGGAAATCGCGCCAAAGAACCTTAGAGGGG CTCTAGCTACATTGAATCAGTTCATGATCTGCGGAGGAGCTTCAGCATCTTTCATTCTAGGCACATTCCTGACGTGGAGGGCTCTTGCTTTAACTGGACT TATCCCTTGTGCAGTCCTGCTTATCGGGCTGATGTTCATGCCCGAATCTCCTAGATGGCTAGCAAAGATAGGCAAAGAGAAGGATTTCGAAGTTGCGCTG CAGAAACTCCGCGGCAAGGATGCTGACATTTCGAAAGAGGCAGATGAGATCAAGGAATACATCGAGACACTCGACCGGCTTCCCAAAATTGGAGTTGGGT TGATGGTGGTCCAGCAATTTGGAGGAATCAATGGAGTCTGCTTTTATGTCAGCAACATTTTCAAGTCTGCAGGATTCTCGCCCAGTGTTGGAACCATTAC CTACGCCATTCTTCAGATCGTAGTGACACTCGCCATAACACAAGTGATTGACAGAGCAGGAAGGAAGCCACTTCTGTTGGTTTCAGGATCTGGCATGGCT TTGGCCTGCTTGATAATAGGCATTTCATTCTACCTCAAGGCCAATGAATTAGCTCTCCACATTGTCCCCATGCTGGCAGTAACTGGCGTTCTGTTATACA TTGGATCCTTTTCAGCTGGAATGGGTGCTGTTCCATGGGTCATCATGTCCGAGATATTCCCAATAAACATAAAGGGAACAGCCGGAGGATTTGCAACACT GGTGAACTGGTTTTGTGCATGGGCAGTTTCTTACACTTACAACTTCCTCATGTCTTGGAGTTCCTATGGTACATTTCTTCTTTACGCTGCAGTCAATGCA CTGAGTATCATATTCGTAATCATGGTGGTACCGGAGACAAAAGGCAGAACTTTAGAACAGATACAAGCAGCCATTAATGGTTAG
AA sequence Show only first row Show all	>Lus10008179 pacid=23173774 polypeptide=Lus10008179 locus=Lus10008179.g ID=Lus10008179.BGIv1.0 annot-version=v1.0 MISKSLKDDLTTHHDDAPTALLNGKAGFSSPTQDAITQDLSLSLAQYSVFGSILTFGAMIGAAASGYLADHLGRKGAMRLSSAFCVAGWLAIYFAQGAVA LDIGRLATGFGMGVFSYVVPVFISEIAPKNLRGALATLNQFMICGGASASFILGTFLTWRALALTGLIPCAVLLIGLMFMPESPRWLAKIGKEKDFEVAL QKLRGKDADISKEADEIKEYIETLDRLPKIGVGLMVVQQFGGINGVCFYVSNIFKSAGFSPSVGTITYAILQIVVTLAITQVIDRAGRKPLLLVSGSGMA LACLIIGISFYLKANELALHIVPMLAVTGVLLYIGSFSAGMGAVPWVIMSEIFPINIKGTAGGFATLVNWFCAWAVSYTYNFLMSWSSYGTFLLYAAVNA LSIIFVIMVVPETKGRTLEQIQAAING

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	0	1
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	1.4	0.9335
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	2.4	0.9323
AT3G11640			unknown protein		Lus10016964 [exp]	4.2	0.8958
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10013942 [exp]	4.9	0.9165
AT1G30010			Intron maturase, type II famil...		Lus10028124 [exp]	5.3	0.9033
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10018770 [exp]	6.0	0.8815
AT3G11640			unknown protein		Lus10016965 [exp]	7.1	0.8699
AT1G73470			unknown protein		Lus10042285 [exp]	9.5	0.8811
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10025101 [exp]	9.9	0.8754
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10023983 [exp]	10.4	0.8437

Compare expression of checked genes

Lus10008179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.