Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56680 267 / 3e-87 SYNC1ARATH, SYNC1, EMB2755 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT1G70980 266 / 5e-87 SYNC3, SYNC1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT4G17300 204 / 6e-63 ATNS1, NS1, OVA8 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) AT3G07420 179 / 3e-53 ATNS2, SYNC2_ARATH, NS2 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) AT4G31180 65 / 2e-12 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) AT4G26870 62 / 2e-11 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012920 [exp] 287 / 2e-95 AT5G56680 799 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10032704 [exp] 285 / 7e-94 AT5G56680 907 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10038228 [exp] 197 / 1e-62 AT3G07420 353 / 7e-118 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10025874 [exp] 201 / 3e-61 AT3G07420 604 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Lus10007470 [exp] 164 / 1e-47 AT4G17300 873 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028945 [exp] 157 / 9e-46 AT4G17300 740 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Lus10028555 [exp] 65 / 2e-12 AT4G31180 606 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10018862 [exp] 61 / 6e-11 AT4G31180 667 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2) Lus10028557 [exp] 57 / 3e-10 AT4G31180 235 / 8e-76 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G070000 [exp] 274 / 6e-90 AT5G56680 931 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G153900 [exp] 273 / 2e-89 AT5G56680 929 / 0.0 EMBRYO DEFECTIVE 2755, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.002G249700 [exp] 197 / 2e-59 AT3G07420 654 / 0.0 SYNTHETASE C2, asparaginyl-tRNA synthetase 2 (.1) Potri.007G129800 [exp] 193 / 1e-58 AT4G17300 872 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.017G028800 [exp] 192 / 3e-58 AT4G17300 888 / 0.0 ovule abortion 8, Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1) Potri.006G085400 [exp] 64 / 4e-12 AT4G31180 709 / 0.0 Class II aminoacyl-tRNA and biotin synthetases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF00152 [flax] [poplar] tRNA-synt_2 tRNA synthetases class II (D, K and N)
Representative CDS sequence Show only first row Show all	>Lus10008180 pacid=23173779 polypeptide=Lus10008180 locus=Lus10008180.g ID=Lus10008180.BGIv1.0 annot-version=v1.0 ATGGATCAAATCCAAAATCCATTTCTTTGGCTCCAGATTCGGACTCAGGATGACAAGAACTGTGCAGAAGCATACGTAAAGTATATGTGCAAATGGCTGC TTGATAAGTGTTACGACGACATGGAGGCTGTGAAGGATAGCACTAAGACGTTTGATAACCAAGTTGAATGGGGCATTGATCTCGCATCTGAACATGTGAG GTTTCTGGCAGAAGAAAAGTTCGAGAAGCCGGTTATTGTGTACGATTATCCTAAAGGAATCAAAGCCTTCTACATGAGGCTGAACGATGATAAGAAGACG GTGGCTGCCATGGATATTCTTGTACCAAAGGTGGGAGAATTGATTGGTGGAAGTCAAAGGGAGGAGCGATATGAAGTGATGGAAGAGAGGATTGTGGAGA TGGGGCTGCCACTGGAGGCATACAAGTGGTACCTCGACTTGAGGCAGTTTGGGACCATAAAGCATAGTGGGTTCGGGTTAGGATTCGACGGGATGATACT GTTTGCGACTGGTATTGACAATATCAGAGAAGTTATTCCCTTCCGCAGAAGTGCACCACCCAGAAGTACAGAGAAAGCAGATTTGTGA
AA sequence Show only first row Show all	>Lus10008180 pacid=23173779 polypeptide=Lus10008180 locus=Lus10008180.g ID=Lus10008180.BGIv1.0 annot-version=v1.0 MDQIQNPFLWLQIRTQDDKNCAEAYVKYMCKWLLDKCYDDMEAVKDSTKTFDNQVEWGIDLASEHVRFLAEEKFEKPVIVYDYPKGIKAFYMRLNDDKKT VAAMDILVPKVGELIGGSQREERYEVMEERIVEMGLPLEAYKWYLDLRQFGTIKHSGFGLGFDGMILFATGIDNIREVIPFRRSAPPRSTEKADL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10008180 [exp]	0	1
AT5G20140			SOUL heme-binding family prote...		Lus10035075 [exp]	1.4	0.7783
AT2G01260			Protein of unknown function (D...		Lus10041982 [exp]	1.7	0.7388
					Lus10007169 [exp]	3.9	0.8068
					Lus10040033 [exp]	11.6	0.6871
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10023079 [exp]	13.3	0.7022
					Lus10010827 [exp]	16.6	0.6322
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	17.9	0.6322
					Lus10005843 [exp]	19.2	0.6322
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10015095 [exp]	20.3	0.5986
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	20.3	0.6322

Compare expression of checked genes

Lus10008180 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.