Plant FIBer expression Database

Lus10008181 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G31050 99 / 2e-25 Biotin/lipoate A/B protein ligase family (.1)
AT1G47578 99 / 4e-25 Biotin/lipoate A/B protein ligase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025664
[exp]
132 / 1e-37 AT4G31050 346 / 8e-120 Biotin/lipoate A/B protein ligase family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G131000
[exp]
0 / 1 AT1G47578 360 / 6e-126 Biotin/lipoate A/B protein ligase family (.1)
PFAM info
Representative CDS sequence
>Lus10008181 pacid=23173757 polypeptide=Lus10008181 locus=Lus10008181.g ID=Lus10008181.BGIv1.0 annot-version=v1.0
ATGATTGTATCTTGTACTCATCATCCTATTTATACATTGGGCACAGGAAGCTCGGTCGAGCGCCTTAATTTTGACATAAAAGATGCTCCTTTAGACGTTT
ATCGAACCGAGCAAGGTGGGGAAGTCACTGATCATGGACCTGGACAGGTAGGTACTTTGGGAGGGCAGACATTGTTTCAGTTCTTCGGTCGTAGTGTTTA
TGGATTGGATAGTAATGATGTGTGTCTAGTTAGTTATGTACTCAATTGTCAATCTCCGGAACCACAAGACGGATTTCATTGGTACCTAAGGGCGCTTGAG
GAGGTGATTCTTCGTGTTCTTTCGTCGGCGTTTGGTATCAAGCCTTTCACGAGTCGAGGGTTTAAATGGAGTGGGGTTTGGCAATCGGAAACTGGCTGCA
GTTGGGGTAAAAGTGTGGCGGTGGATAACATACCATGGCATTGCCCTGAATGTGACTACAGATTTAACGCATTTCGATTGGATAGTGCCATGCGGGATCA
AGAACAGCAAGGGTGGCAGCATCAAGTCCCTGCTAGGTGGTGCTTGTTTAACGAATCAAAAAGGAAATGGAGGCCTAGATGA
AA sequence
>Lus10008181 pacid=23173757 polypeptide=Lus10008181 locus=Lus10008181.g ID=Lus10008181.BGIv1.0 annot-version=v1.0
MIVSCTHHPIYTLGTGSSVERLNFDIKDAPLDVYRTEQGGEVTDHGPGQVGTLGGQTLFQFFGRSVYGLDSNDVCLVSYVLNCQSPEPQDGFHWYLRALE
EVILRVLSSAFGIKPFTSRGFKWSGVWQSETGCSWGKSVAVDNIPWHCPECDYRFNAFRLDSAMRDQEQQGWQHQVPARWCLFNESKRKWRPR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G31050 Biotin/lipoate A/B protein lig... Lus10008181
[exp]
0 1
Lus10031737
[exp]
1.0 0.9188
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10031478
[exp]
3.2 0.7897
Lus10026869
[exp]
3.5 0.7847
AT4G17905 ATL4H RING/U-box superfamily protein... Lus10024405
[exp]
6.3 0.7242
Lus10016514
[exp]
7.9 0.7305
Lus10039495
[exp]
8.7 0.7339
AT5G64700 nodulin MtN21 /EamA-like trans... Lus10020867
[exp]
11.0 0.7334
Lus10008920
[exp]
11.1 0.7341
AT2G45400 BEN1 NAD(P)-binding Rossmann-fold s... Lus10004029
[exp]
14.3 0.6651
AT3G01140 MYB NOK, ATMYB106 NOECK, myb domain protein 106 ... Lus10030442
[exp]
16.1 0.6794

Lus10008181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.