Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 590 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 497 / 7e-174 Major facilitator superfamily protein (.1) AT3G05150 466 / 1e-161 Major facilitator superfamily protein (.1) AT1G54730 416 / 5e-142 Major facilitator superfamily protein (.1.2.3) AT1G08930 361 / 2e-120 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT3G20460 359 / 1e-119 Major facilitator superfamily protein (.1) AT1G08920 355 / 2e-118 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT3G05165 344 / 5e-114 Major facilitator superfamily protein (.1.2.3.4.5) AT1G19450 338 / 1e-111 Major facilitator superfamily protein (.1) AT5G27350 337 / 2e-111 SFP1 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027976 [exp] 747 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 743 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 671 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 659 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 654 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 645 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 595 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 474 / 1e-164 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 439 / 3e-151 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 657 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 585 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 490 / 7e-171 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 436 / 4e-150 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G040000 [exp] 358 / 2e-119 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 357 / 5e-119 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 355 / 3e-118 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 345 / 2e-114 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.007G024300 [exp] 345 / 3e-114 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.002G259900 [exp] 338 / 2e-111 AT1G75220 744 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10008182 pacid=23173778 polypeptide=Lus10008182 locus=Lus10008182.g ID=Lus10008182.BGIv1.0 annot-version=v1.0 ATGTCAATCAAGGAAGAAGATGTGGAAAATAACAATCATAGTGATGCTAACAACAGCATGAGGGAGCCATTCATCCGGAAGGACGGGGAAGAACATGGAT CGTCGTCGGAGAAGAAAAATGAGAGCCTGTGGATGGTCTACTTCAGCACTTTCGTTGCTGTTTGTGGCTCTTACGAGTTCGGTTGCTGCGCAGGATTCTC TTCTCCAACGCAAGATGCAATCACACAAGATCTTTCACTGTCTCTGGCCGAGGCGATGAGACTGTCGAGTGCCTTCTGTGTAGCTGGCTGGCTCGCCATT TACTTTGCTCAGGGTGCAGTGGCATTGGACATTGGCAGATTGGCCACTGGCTACGGAATGGGAGTGTTCTCCTACGTGGTTCCAGTTTTCATATCCGAAA TCGCGCCCAAGAACCTTCGAGGAGCTCTAGCTACGTTGAATCAGGTCATGATCTGCGGTGGAGTGTCCGTCTCCTTCATTATAGGCACATTTCTAACGTG GAGGGCTCTTGCTTTAACTGGACTAGTCCCTTGTGCAATCCTGCTTATCGGGCTGATGTTCATGCCCGAATCTCCTAGATGGCTGGCAAAGACAGGCAAC GAGAAGGATTTCGAAGTGGCACTGCAGAAACTTCGCGGCAAGGATGCTAACATTTCGAAAGAAGCTGATGAGATCAAAGAATACATCGAGACACTCGACC TGCTGCCCAAAGTAAAGCTGCTAGACTTGTTCAACAGAAGATACCTAAGATCAGTCACTATTGGTGTTGGGCTGATGGTGGCGCAGCAATTCGGAGGAAT AAATGGAGTCTGCTTCTATGTCAGCAACATTTTCAAGTCAGCAGGATTCTCTCCTAGTGTTGGAACTATTACCTATGCAATTATTCAGGTTGTAGTGACA CTCTTAATCACACAAGTGATTGACAGAGCAGGAAGGAAGCCTCTTTTACTGGTAAAAATTCTGGAAAAAATACACCTCCTCACTACCGATTTCGATTCTG ACTCTTCGTCGTCACGTTTTTTGCTGACCGAGCAGGTTTCCGGATCTGGGTTGGTGCTATCTTGCCTGATGGTAGCACTTTCATTCTACCTCAAGGTCAA TGAATTGGCTCTCCACATTGTTCCCATGCTGGCTGTAACTGGCATCTTGTTGTACATTGGATCCTTTTCAGCAGGAATGGGTGCAGTTCCATGGGTGGTT ATGTCTGAGATATTCCCAATAAACATAAAGGGAGCAGCTGGAGGATTGGCAACATTGGTGAACTGGTTTGGTGCATGGGCAATTTCTTACACTTACAACT TCCTCATGTCTTGGAGCTCCTATGGTACTTTTCTTGTTTATGCTGCAATCAATGCACTGGGCATAGTATTCGTAATCATGGTGGTGCCTGAGACAAAAGG CAGAACCTTGGAACAGATACAAGCAGCCATTAACAGTTAA
AA sequence Show only first row Show all	>Lus10008182 pacid=23173778 polypeptide=Lus10008182 locus=Lus10008182.g ID=Lus10008182.BGIv1.0 annot-version=v1.0 MSIKEEDVENNNHSDANNSMREPFIRKDGEEHGSSSEKKNESLWMVYFSTFVAVCGSYEFGCCAGFSSPTQDAITQDLSLSLAEAMRLSSAFCVAGWLAI YFAQGAVALDIGRLATGYGMGVFSYVVPVFISEIAPKNLRGALATLNQVMICGGVSVSFIIGTFLTWRALALTGLVPCAILLIGLMFMPESPRWLAKTGN EKDFEVALQKLRGKDANISKEADEIKEYIETLDLLPKVKLLDLFNRRYLRSVTIGVGLMVAQQFGGINGVCFYVSNIFKSAGFSPSVGTITYAIIQVVVT LLITQVIDRAGRKPLLLVKILEKIHLLTTDFDSDSSSSRFLLTEQVSGSGLVLSCLMVALSFYLKVNELALHIVPMLAVTGILLYIGSFSAGMGAVPWVV MSEIFPINIKGAAGGLATLVNWFGAWAISYTYNFLMSWSSYGTFLVYAAINALGIVFVIMVVPETKGRTLEQIQAAINS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10008182 [exp]	0	1
AT2G17350			unknown protein		Lus10022984 [exp]	1.4	0.8130
AT2G48020			Major facilitator superfamily ...		Lus10027976 [exp]	8.7	0.7671
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10040414 [exp]	13.9	0.7389
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10022621 [exp]	15.2	0.7425
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10002311 [exp]	17.5	0.7809
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10003156 [exp]	18.1	0.7674
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	24.7	0.7518
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	31.6	0.7430
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024935 [exp]	35.6	0.7655
AT5G38220			alpha/beta-Hydrolases superfam...		Lus10017617 [exp]	37.9	0.6653

Compare expression of checked genes

Lus10008182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.