Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 640 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 549 / 0 Major facilitator superfamily protein (.1) AT3G05150 523 / 0 Major facilitator superfamily protein (.1) AT1G54730 465 / 3e-161 Major facilitator superfamily protein (.1.2.3) AT1G08920 421 / 6e-144 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT1G08930 417 / 3e-142 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT5G27350 399 / 3e-135 SFP1 Major facilitator superfamily protein (.1) AT3G20460 396 / 6e-134 Major facilitator superfamily protein (.1) AT5G27360 392 / 1e-132 SFP2 Major facilitator superfamily protein (.1) AT1G75220 392 / 1e-132 AtERDL6 ERD6-like 6, Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008182 [exp] 745 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027975 [exp] 730 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008184 [exp] 703 / 0 AT2G48020 593 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 702 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 689 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 684 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 615 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 547 / 0 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 484 / 1e-168 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 703 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 655 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 563 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 490 / 5e-171 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 424 / 6e-145 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 414 / 4e-141 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G040000 [exp] 410 / 1e-139 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3) Potri.013G027700 [exp] 407 / 2e-138 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.007G024300 [exp] 402 / 3e-136 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 385 / 4e-130 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10008183 pacid=23173784 polypeptide=Lus10008183 locus=Lus10008183.g ID=Lus10008183.BGIv1.0 annot-version=v1.0 ATGTCAATCAAGGAAGCCGTGGAGAAAAACAATCATACTGATACTGAAAACAACACGAGGGAGCCATTCATACGGAAGAATCATTACACATACGAGGAAG ATGGGTCGTCGGAGAACAAGAGTGGGAGCCTATGGATGGTCTACTTCAGCACTTTCGTTGCCATCTGTGGTGCTTACGAGTTCGGTTGCTGCGTGGGATT TTCGTCACCCACCCAAGACGCAATTAGGAAAGATCTTTCACTGTCTCTGGCCGAGTATTCAATGTTTGGTTCCATTTTGACGTTTGGAGCAATGATTGGT GCTGCTACTAGCGGATATTTGGCTGATCAACTTGGTCGCAAAGGGGCAATGAGATTGTCAAGTGCCTTCTGTGTAGCTGGCTGGCTAGCCATTTACTTTG CTCAGGATGCAGTGGCATTGGACATTGGTAGATTGGCAACTGGCTATGGAATGGGAGTGTTCTCCTATGTGGTGCCAGTTTTCATATCCGAGATAGCGCC CAAAAACCTTCGAGGAGCTTTAGCTACATTGAATCAGGTCATGATCAGTGGTGGAGTCTCGTTGTCCTTCGTTATAGGCACATTTCTAACGTGGAGGGCT CTTGCTTTAACTGGACTAATCCCTTGTGCAATCCTACTTGTCGGGCTGATGTTCATGCCCGAATCTCCTAGATGGCTAGCAAAGATAGGCAACCAGAAGG ATTTCGAAATTGCGCTGCAGAAACTCCGCGGCAAGGATGCTGACATTTCGAAAGAGGCTGATGAGATCAAGGAATACATTGAGACACTCGACCGGCTCCC CAAAGTAAAGATGATGGACTTGTTCAATAGAAGATACCTAAGATCAGTCATTATTGGTGTTGGGTTGATGCTGGCCCAGCAATTTGGAGGAATTAATGCA GTCTGCTTCTATGGCAGCAATATATTCAAATCAGCAGGATTCTCTCCTGATATTGGAACTATTACCTATGCCATTATCCAGATGGTAGTGTCACTGCTAA TCACACAAGTGATTGACAGAGCAGGAAGGAAGCCTCTTTTACTGGTTTCAGGATCTGGTTTAGTACTAGCTTGCTCAATGACAGCCCTTTCATTCTACCT CAAGGTTAATGAATTGGCTCTCCACATTGTCCCAATGATGGCTGTAACCGGCATATCGTTATACATTGGATTCTATTCAGTTGGAATGGGTGCTGTTCCA TGGGTCGTTATGTCCGAGATATTCCCAATAAACATAAAGGGAGTAGGTGGAGGATTTGCAACACTGGTGAACTGGTTTGGTGCATGGGCAGTTTCCTACA CTTACAACTTTCTCATGGTTTGGAGCTCCTATGGTACATTTCTTATATTTGCTGGAGTCAACGCACTAGCGATAGTATTTGTAATCATGGTGTTACCAGA GACAAAAGGCAGAACCTTGGAACAGATACAGGCAGCCATTAATCGTTAG
AA sequence Show only first row Show all	>Lus10008183 pacid=23173784 polypeptide=Lus10008183 locus=Lus10008183.g ID=Lus10008183.BGIv1.0 annot-version=v1.0 MSIKEAVEKNNHTDTENNTREPFIRKNHYTYEEDGSSENKSGSLWMVYFSTFVAICGAYEFGCCVGFSSPTQDAIRKDLSLSLAEYSMFGSILTFGAMIG AATSGYLADQLGRKGAMRLSSAFCVAGWLAIYFAQDAVALDIGRLATGYGMGVFSYVVPVFISEIAPKNLRGALATLNQVMISGGVSLSFVIGTFLTWRA LALTGLIPCAILLVGLMFMPESPRWLAKIGNQKDFEIALQKLRGKDADISKEADEIKEYIETLDRLPKVKMMDLFNRRYLRSVIIGVGLMLAQQFGGINA VCFYGSNIFKSAGFSPDIGTITYAIIQMVVSLLITQVIDRAGRKPLLLVSGSGLVLACSMTALSFYLKVNELALHIVPMMAVTGISLYIGFYSVGMGAVP WVVMSEIFPINIKGVGGGFATLVNWFGAWAVSYTYNFLMVWSSYGTFLIFAGVNALAIVFVIMVLPETKGRTLEQIQAAINR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10008183 [exp]	0	1
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	3.0	0.8295
AT1G19600			pfkB-like carbohydrate kinase ...		Lus10007397 [exp]	5.3	0.8382
AT2G43990			unknown protein		Lus10008165 [exp]	6.0	0.8406
AT1G73040			Mannose-binding lectin superfa...		Lus10037605 [exp]	7.8	0.8649
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	8.9	0.8315
AT3G08890			Protein of unknown function, D...		Lus10022674 [exp]	9.9	0.8214
AT5G40060			Disease resistance protein (NB...		Lus10002248 [exp]	11.0	0.8197
AT5G53110			RING/U-box superfamily protein...		Lus10004756 [exp]	11.7	0.8332
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10027716 [exp]	13.9	0.8519
AT1G53050			Protein kinase superfamily pro...		Lus10000584 [exp]	24.3	0.7600

Compare expression of checked genes

Lus10008183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.