Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48020 575 / 0 Major facilitator superfamily protein (.1.2) AT5G18840 513 / 0 Major facilitator superfamily protein (.1) AT3G05150 479 / 1e-167 Major facilitator superfamily protein (.1) AT1G54730 442 / 4e-153 Major facilitator superfamily protein (.1.2.3) AT1G08930 379 / 1e-127 ERD6 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) AT1G08920 377 / 2e-127 ESL1 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) AT5G27350 363 / 1e-121 SFP1 Major facilitator superfamily protein (.1) AT3G05160 359 / 1e-120 Major facilitator superfamily protein (.1.2) AT3G20460 358 / 7e-120 Major facilitator superfamily protein (.1) AT3G05165 357 / 2e-119 Major facilitator superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027975 [exp] 714 / 0 AT2G48020 626 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008183 [exp] 703 / 0 AT2G48020 657 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008179 [exp] 687 / 0 AT2G48020 590 / 0.0 Major facilitator superfamily protein (.1.2) Lus10029629 [exp] 653 / 0 AT2G48020 661 / 0.0 Major facilitator superfamily protein (.1.2) Lus10008182 [exp] 649 / 0 AT2G48020 613 / 0.0 Major facilitator superfamily protein (.1.2) Lus10042676 [exp] 638 / 0 AT2G48020 603 / 0.0 Major facilitator superfamily protein (.1.2) Lus10027976 [exp] 608 / 0 AT2G48020 598 / 0.0 Major facilitator superfamily protein (.1.2) Lus10012780 [exp] 495 / 2e-173 AT5G18840 685 / 0.0 Major facilitator superfamily protein (.1) Lus10035354 [exp] 448 / 4e-155 AT1G54730 615 / 0.0 Major facilitator superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212900 [exp] 630 / 0 AT2G48020 723 / 0.0 Major facilitator superfamily protein (.1.2) Potri.014G136600 [exp] 575 / 0 AT2G48020 665 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 514 / 0 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 456 / 2e-158 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3) Potri.005G039900 [exp] 392 / 3e-133 AT1G08920 461 / 1e-159 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.005G037000 [exp] 389 / 6e-132 AT1G08920 483 / 3e-168 ERD (early response to dehydration) six-like 1 (.1), ERD (early response to dehydration) six-like 1 (.2), ERD (early response to dehydration) six-like 1 (.3) Potri.013G027700 [exp] 379 / 4e-128 AT1G08930 483 / 6e-168 EARLY RESPONSE TO DEHYDRATION 6, Major facilitator superfamily protein (.1.2) Potri.007G024300 [exp] 355 / 2e-118 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G027800 [exp] 352 / 1e-117 AT5G27360 405 / 6e-138 Major facilitator superfamily protein (.1) Potri.005G040000 [exp] 352 / 1e-117 AT1G54730 429 / 2e-147 Major facilitator superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10008184 pacid=23173771 polypeptide=Lus10008184 locus=Lus10008184.g ID=Lus10008184.BGIv1.0 annot-version=v1.0 ATGACAGAGCCATTCATACGGAAGAACGATTACACAGATGAAGAAGGCAGGAAGAAGAATGAGAGCCTGTGGATGGTTTACTTCAGCACTTTCGTGGCTG TTTGTGGCTCTTACGTCTTCGGTTGCTGCGTTGGATTTTCGTCACCCACCCAAGACGCAATCAGGAAAGATCTGTCACTGTCTCTGGCAGAGTTACAGGA ACTTATATACAATCATGACGTTGTTCTGCAGTATTCAATGTTTGGTTCGATTTTGACGTTCGGAGCGATGATCGGTGCTGCTGCTAGCGGATATTTAGCT GATCAACTTGGTCGCAAAGGGGCTATGAGATTGTCGACTGCGTTCTGTGTAGCTGGCTGGCTAGCCATTTACTTCGCTCAGGGAGCAGTGGCATTGGACA TTGGTAGATTGGCAACTGGATTTGGAATGGGAGTGTTCTCCTATGTGGTGCCAGTTTTCATATCGGAGATTGCCCCAAAGAACCTTCGAGGGGCTCTAGC TACATTGAATCAGGTCATGATCTGCGGAGGAGCATCAGCATCTTTCATTCTAGGAAATTTCCTAACATGGAGGGCTCTTGCTTTAACTGGACTAGTCCCA TGTGCTGTCCTGTTGATTGGGCTGATGTTCATGCCCGAATCTCCTAGATGGCTAGCGAAGACGGGAGGAGAGAAGGATTTCGTACTTGCATTGCAGAAAC TTCGTGGCGAGGATGCTGATGTTTCTGATGAAGCAGATGAGATAAAGATTGGAGTTGGGTTGATGGTGGTCCAGCAATTTGGAGGAATCAATGGAGTCTG CTTTTATGTCAGCAACATTTTCAAGTCTGCAGGATTCTCGCCGAGTGTTGGAACTATTATCTACGCCATTCTTCAGATTCTAGTCACACTCGCCATAACG CAAGTGATCGACAGAGCAGGAAGGAAGCCACTTTTGTTGGTTTCAGGATCTGGTTTGGTTCTGGCCTGCTTGATAATAGGCCTTTCATTCTACCTCAAGG TCAATGAACTGGCTCTCAACATTGTCCCCGTGCTGGCAGTAACTGGCCTACTGTTATACGTTGGTTCCTTTTCAGCTGGAATGGGTGCTGTTCCATGGGT CATCATGTCTGAGATATTCCCAATAAACATAAAGGGAACGGCTGGAGGATTTGCAACACTAGTGAACTGGTTTGGTGCATGGGCAGTTTCCTACACTTAC AACTTCCTCATGTCTTGGAGCTCCTACGGTACATTTCTTCTTTATGCTGGAGTCAATGCACTAAGTATCATATTCGTAATCAAGCTAGTACCGGAGACAA AAGGCAGAACCTTAGAACAGATACAAGCAGCCATTAATGGCTAG
AA sequence Show only first row Show all	>Lus10008184 pacid=23173771 polypeptide=Lus10008184 locus=Lus10008184.g ID=Lus10008184.BGIv1.0 annot-version=v1.0 MTEPFIRKNDYTDEEGRKKNESLWMVYFSTFVAVCGSYVFGCCVGFSSPTQDAIRKDLSLSLAELQELIYNHDVVLQYSMFGSILTFGAMIGAAASGYLA DQLGRKGAMRLSTAFCVAGWLAIYFAQGAVALDIGRLATGFGMGVFSYVVPVFISEIAPKNLRGALATLNQVMICGGASASFILGNFLTWRALALTGLVP CAVLLIGLMFMPESPRWLAKTGGEKDFVLALQKLRGEDADVSDEADEIKIGVGLMVVQQFGGINGVCFYVSNIFKSAGFSPSVGTIIYAILQILVTLAIT QVIDRAGRKPLLLVSGSGLVLACLIIGLSFYLKVNELALNIVPVLAVTGLLLYVGSFSAGMGAVPWVIMSEIFPINIKGTAGGFATLVNWFGAWAVSYTY NFLMSWSSYGTFLLYAGVNALSIIFVIKLVPETKGRTLEQIQAAING

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48020			Major facilitator superfamily ...		Lus10008184 [exp]	0	1
					Lus10027376 [exp]	1.0	0.9848
AT2G41860		CPK14	calcium-dependent protein kina...		Lus10025528 [exp]	3.5	0.9709
AT1G29860	WRKY	ATWRKY71, WRKY7...	WRKY DNA-binding protein 71 (....		Lus10004612 [exp]	3.5	0.9791
AT2G23770			protein kinase family protein ...		Lus10019661 [exp]	4.5	0.9760
					Lus10031841 [exp]	6.5	0.9744
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10014146 [exp]	7.3	0.9771
AT3G58480			calmodulin-binding family prot...		Lus10013759 [exp]	10.2	0.9655
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10008392 [exp]	12.3	0.9544
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	14.5	0.9719
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10037585 [exp]	15.0	0.9642

Compare expression of checked genes

Lus10008184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.