Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19290 840 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 332 / 1e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 308 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 293 / 4e-86 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74580 289 / 1e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 286 / 1e-82 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 286 / 4e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 279 / 6e-79 PGR3 proton gradient regulation 3 (.1) AT4G19440 270 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G53700 268 / 5e-77 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027974 [exp] 1080 / 0 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 327 / 3e-97 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 323 / 7e-96 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 320 / 3e-93 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 310 / 9e-92 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019524 [exp] 308 / 1e-90 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 306 / 1e-89 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042529 [exp] 301 / 5e-87 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037968 [exp] 300 / 6e-86 AT5G55840 1131 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G040200 [exp] 1196 / 0 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 373 / 5e-113 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 338 / 2e-101 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 322 / 1e-94 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G250700 [exp] 310 / 7e-92 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G368700 [exp] 308 / 5e-89 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 302 / 1e-88 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 283 / 3e-83 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G036400 [exp] 284 / 3e-82 AT1G31840 696 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G234500 [exp] 280 / 1e-81 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10008185 pacid=23173777 polypeptide=Lus10008185 locus=Lus10008185.g ID=Lus10008185.BGIv1.0 annot-version=v1.0 ATGCTCAGGTACTCATCCATTCGTTCTCCTCCGTCAGTACCTTCGTTTCTCTTCTCTTGCCTCCACCGCCGTCGCTCGATTCACTGGAAGCCTCATCACG AATCCAAGTTGACTCACCTGGAACTCGTAGACAGGATATCCCGCCTTATTGTTCTCAACCGTCACGATGCTCTCGACGGCCTCAAATTCGATTTCTCCGA TAAACTCCTTGACTCCGTTCTACTGAAACTCAGGCTCAACGCCGCTGCTTGTCTGTGCTTCTTCAAATTGGCCTCCAGGCAACCTACGTTTAGACCGGAG CTCAAGTCTTATTGCAAGCTGGTTCATATTCTGTCGCGTGCTCGAATGTATGTGGAGGCGAGATCGTATTTGAGTGAATTGGTTGGTTTGTGCAAGAACG ATTTTCATTCTTTTGCCGTCTGGGATGAGCTCGTTAGGTTTTACCGTGAATTTGGATTTTCTCCTACCGTTTTCGATATGATACTGAAGGCGTATGCGGA GAAGGGAAAGGTGAAGAATGCACTCCATGTGTTTGATAATATGTCGAAGTTTGGTCGGGTGCCAAGCTTGAGGTCTTGTAATAGCTTGTTGAGTAATTTA GTTAGAAAAGGACAGAGTTACTCTGCTGTGCTTGTTTATGACCACATGCTGAAAATGGGGATTGTGCCGGATGTGTTCACCAGCTCAATTTTGCTTAATG CGTTTTGCAAGCAGGGGAGACTGGATAGAGCTGTGGAGTTTCTTAAAGAAATGGAGAAGTCAGGTTTTGAGTTGAATGTGGTGTCCTACAATAGCTTGAT TGATGGCTATGTTAGTATTGAGGATATGGGAGGAGTCAATAAGGTATTGGAAATCATGAATGCAAAGGGTGTTATGAGAAATGAAGTTACATTTACTTTG TTAATCAAGGGTTACTGTAGAAAATCTATGTTAAAGGAAGCAGAGGAGGTGCTGAGACAGATGAAGAAAGAGAAAGGAGTGTCCGTCGATGAATATGCTT ATGGTGTGTTGATTGATGGATATTGTCGTATTGGTAATCTGGTAGATGCTGCCCGAATTCGAGATGAAATGTTGGAGGTAGGATTAAAAATGAATTTATT TGTTTGCAACTCATTCATGAACGGGTACTCTAAGAATGGTCGGATGAGTGAGGCAGAGAGATTGTTGGTAGAAATGAGAGAGTGGGGATTAAGGCCAGAT TCCTACAGTTATTGTACTCTTGTCGATGGATACTGTAGGGAAGGCCTTATTGATCGAGCTTTCAGTGTTTGTGAAGTGATGGTTCAGGAGGGCATTGATC CAAGCATTGTAACTTACAACACTCTTTTGAAAGGACTATCCCGTGTGGGTAACCTTGAGGATGCTTTGAAATGCTGGGAGCTTATGCGAAGGAGAGGTGT GGAACCCAATGAAATCAGCTATTGTACTTTGCTTGACGGGCTATTCAAGATAAGAGACACTTCAAGGGCTTTAACCCTGTGGAACGATATCCTGGTCAGA GGTTTTACCAAAACTACACATGCTTTCAATATAATGATCAACGGGTTGTGTAAGGTGGGTAAAATGGTTGAAGCTGAGCAGACCTTTTGCAGAATGGTGG AACTGGGTTGTAGACCTGATGGCATAACATACAGAACTCTGAGCGATGGGTACTGTAAGGCTGGAAATGTAGAAGAAGCACTCAAAGTCAAAAAGAAGAT GGAGAAAGAAGCAATTTCTCCTTCAATTGAAATGTACAACTCTCTCATTACAACACTTTTCAAGAGTAAGAAAGTGAATAAGGTTTTGGATCTTCTTGGT GAATTGGAAAAGCATCAGTTAACACCTACTCTTATTACTTATGGAGCTATAATTTCTGGCTGGTGTGATGAAGGAAGGCTGGATCGAGCTGTTACTGCAT ATTTTGAGATGATATCAAAGAAAATTGCACCAAATTTGATTATATGTGGAAAAATTATTAGCAGCCTCTATAATGTTGGCAGGATAGAAGAAGCAAATAT ATTACTGCAGAAGATTGTTGATTTCAGTGATTTGGACCCCAATTTATTTGGAAAGCCTCCACAAAAGGATGCTAGATATGTAGATTGCGAGAAGATTGCT GAGACCCTTGATCAAAATGGTACAAGTTTCTCTCTACCCAACAATGTGCTATATAATATTGCTATTTCTGGGCTTTGTAAGACTGGCACAGTTGATGATG CAAGAAGATTTTTCTCAAGTTTGTTGCATAGAGGTTTTGTTCCAGATAACTTCACTTACTGCACGCTTATTCATGGCTGTTCAGCTGCTGGTAATGTGAT TGAAGCCTTCAGATTGCGTGATGAAATGTTGGAACGTGGTATATTTCCAAACATAGCCACGTACAATGCCTTAATGAATGGCCTATGTAAATCTGGAAAT ATGAGTCGAGCACAAAGACTTTTTGATAAACTCCCACTTAAAGGGCTTGCTCCAAATGTTGTCTCTTACAATACTCTCATAGATGGGTACTGTAGATGTG GAAAGCCTGCAATAGCCTTGGATTTGAAGGACAGAATGGTAACACAAGGGCTTTCTCCTTCCATCATTACTTTCTCTTCTCTGATAAATGGTCTTTGTAA GCAAGGAGACGTTGAAAACTCTGAGAAGCTCTTGGATGAGATGACTGAGCAATTCGCTGATCATAACTTAGCTTCATTTAAGAAAGTAGTGAAGGATTGT GCTCAGCCAAGGGCAACAAAGAAGATCTCTGGGATTAATGATATAGCACATGTTGATTCCTATGCTGGATTTAGTCCTTATGAGCAATTTGAGTTATTAG GGGTCTCCATTGCTAAAAGCACACTGCAAGGATACTCTTTGGATGGGGTTGAAGCTTTATGGAGCTCTGAAGCTGTGTGTTGA
AA sequence Show only first row Show all	>Lus10008185 pacid=23173777 polypeptide=Lus10008185 locus=Lus10008185.g ID=Lus10008185.BGIv1.0 annot-version=v1.0 MLRYSSIRSPPSVPSFLFSCLHRRRSIHWKPHHESKLTHLELVDRISRLIVLNRHDALDGLKFDFSDKLLDSVLLKLRLNAAACLCFFKLASRQPTFRPE LKSYCKLVHILSRARMYVEARSYLSELVGLCKNDFHSFAVWDELVRFYREFGFSPTVFDMILKAYAEKGKVKNALHVFDNMSKFGRVPSLRSCNSLLSNL VRKGQSYSAVLVYDHMLKMGIVPDVFTSSILLNAFCKQGRLDRAVEFLKEMEKSGFELNVVSYNSLIDGYVSIEDMGGVNKVLEIMNAKGVMRNEVTFTL LIKGYCRKSMLKEAEEVLRQMKKEKGVSVDEYAYGVLIDGYCRIGNLVDAARIRDEMLEVGLKMNLFVCNSFMNGYSKNGRMSEAERLLVEMREWGLRPD SYSYCTLVDGYCREGLIDRAFSVCEVMVQEGIDPSIVTYNTLLKGLSRVGNLEDALKCWELMRRRGVEPNEISYCTLLDGLFKIRDTSRALTLWNDILVR GFTKTTHAFNIMINGLCKVGKMVEAEQTFCRMVELGCRPDGITYRTLSDGYCKAGNVEEALKVKKKMEKEAISPSIEMYNSLITTLFKSKKVNKVLDLLG ELEKHQLTPTLITYGAIISGWCDEGRLDRAVTAYFEMISKKIAPNLIICGKIISSLYNVGRIEEANILLQKIVDFSDLDPNLFGKPPQKDARYVDCEKIA ETLDQNGTSFSLPNNVLYNIAISGLCKTGTVDDARRFFSSLLHRGFVPDNFTYCTLIHGCSAAGNVIEAFRLRDEMLERGIFPNIATYNALMNGLCKSGN MSRAQRLFDKLPLKGLAPNVVSYNTLIDGYCRCGKPAIALDLKDRMVTQGLSPSIITFSSLINGLCKQGDVENSEKLLDEMTEQFADHNLASFKKVVKDC AQPRATKKISGINDIAHVDSYAGFSPYEQFELLGVSIAKSTLQGYSLDGVEALWSSEAVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	0	1
AT1G73400			Pentatricopeptide repeat (PPR)...		Lus10019141 [exp]	1.0	0.8813
AT5G58100			unknown protein		Lus10027581 [exp]	4.7	0.8697
AT1G04390			BTB/POZ domain-containing prot...		Lus10027380 [exp]	10.1	0.8535
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	10.8	0.8312
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	11.2	0.8514
AT5G61140			U5 small nuclear ribonucleopro...		Lus10040524 [exp]	12.7	0.8619
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	15.9	0.8361
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10032181 [exp]	16.7	0.8545
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10014045 [exp]	17.7	0.8435
AT1G63110			GPI transamidase subunit PIG-U...		Lus10006320 [exp]	17.8	0.7893

Compare expression of checked genes

Lus10008185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.