Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 636 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 325 / 7e-103 Protein kinase superfamily protein (.1) AT1G56120 271 / 5e-79 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 266 / 2e-77 Leucine-rich repeat transmembrane protein kinase (.1.2) AT4G23130 257 / 2e-76 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT1G56140 262 / 5e-76 Leucine-rich repeat transmembrane protein kinase (.1) AT3G24550 255 / 5e-76 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 251 / 5e-76 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G07650 261 / 1e-75 Leucine-rich repeat transmembrane protein kinase (.1.2) AT2G42960 250 / 1e-75 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027971 [exp] 1153 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 808 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 789 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 733 / 0 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008187 [exp] 631 / 0 AT2G48010 660 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027970 [exp] 627 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 612 / 0 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029711 [exp] 342 / 5e-109 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10029624 [exp] 338 / 1e-108 AT2G48010 262 / 5e-80 receptor-like kinase in in flowers 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136466 [exp] 694 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 686 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 548 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 474 / 1e-161 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 358 / 6e-115 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 349 / 1e-111 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 348 / 2e-111 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 348 / 4e-111 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.011G073516 [exp] 275 / 7e-85 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G072841 [exp] 268 / 8e-84 AT1G07650 489 / 3e-165 Leucine-rich repeat transmembrane protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10008186 pacid=23173795 polypeptide=Lus10008186 locus=Lus10008186.g ID=Lus10008186.BGIv1.0 annot-version=v1.0 ATGTCCGCCGTTCACCACCACCTTTTCCTCCTCTTTCTACTAACACTCACCCCATCAATCCTAGCTCAAAACAACAGCAACTCCACCGATCCCTGCCCGC TAGACTTCTCCGGCCTCCAGCGACTCATCGAGAACTCCGACATCCCAACCCTCGACCGCACCCAGGCTTGCCAGAATGTCCGCCAGGGCCTCCGCATCGT CCTCTCCGAGTACCTCCAGCACACCAACCAATTCCTCCCTCCTCAATCCACTGCCGACTCCTGCTGGCGCTCCTACCAGCGACTCATCGATAGCATCTCC CCGAACAGGTCCGACATCCGTACCACCTGCGGATTCCAGACCACCTGGATCTCCCAAGGCTGTGCCAACGTAACCAACAGGCAGGACTTCGAGTCCAGAA TCACTAGATCCGAGCTCGACCGAGTCAGATCCAGCTGCAGTCAGTCTCTCGAAAACCGCGCCCCTTGCGCTACCTGCATGACGGCCTTGTCCGACGGTCT CCACTTCACCGGAACTTCAATCGGCAACGTCTGCGATTGTCCTGTTTATCCGCTGATCTATGCTGCCGCGTTCGTCAACCAGCTCGGCCCCACCGATCGA GGTACAGTTAAGTGCTTGTTCTTGCTTGATTTCCCTCTAAAGGAATCGAACAGTAGCGGAAGTAACCATGGAAGGAGAACAGCAATTCTTGCTGGTTCAA TTGGAGGTTCTTGCGTGGGGATTTTAATTTTAGGGTTAGGGATTTGGATTATGAGAAGGAAATGGAAGAGGATAATGCAGGAGAAGAAAGAGGAGATGGA GATGGGATTAGATGCCAGACTAGTGAAATTCAGCTACGAGGAGATTAAAAAAGCTACGAAGAATTTCTCGCTCGATAACATCATAGGGAAAGGAGGATTC GGAAACGTTTACAGAGGTGAATTCCCCGACGGTACTGAAGTTGCAGTGAAGAGATTCAAGAACTGTTCAGCAGCAGGGGATGAAAGCTTCGCACACGAAG TTGCGGTCATCGCTAGCATCCGCCATGTGAACTTAGTGGCATTGATAGGCTACTGCATCGCCACTACTCCGTTAGAAGGCCACCAAAGGATGATCATTTG TGAATTGATGAAAAATGGTAGCCTACACGATCATTTATTCGAGTCGAAATCGAGTTCTAAGCTCAGCTGGACAATTCGCCAGAAGGTTGCGTTGGGTACC GCGAGAGGACTTGCTTACTTACACACAGGAGCACAACACACGATCATTCACAGAGACATCAAGGCGCAGAATATCCTCCTCGACGAGACGTTCGAGGCGA AGGTAGCTGATTTCGGGCTGGCCAAATCGAACACGGAAGGTGCGACTCATATGAGCACTAGAGTGGCCGGGACTTGGGGTTATTTGGCTCCGGAGTATGC ACTATACGGACAGTTAACAGAGAGGAGCGATGTTTATAGCTACGGTGTGTTGTTGTTGGAGTTGTTGAGTGGGAGGAAGGCGTTGATTCGGGTTGATGCA GGGGATGGGCTCGACACGAGCCAGCCGTGTTTGGTAGCGGACTGGGCGTGGACTTTGGCAAAGGAAGGGAGGGCGTTGGATGTTGTGGAAGATGGGTTGC CGGAGCGAGGTTCCGAAGATGTGCTGGAGAGGTTTGTTATGGTGGCGATTTTGTGTTCGCATCCGGAGCTTCATGCGAGGCCGACGATGGAGCAGGTCGT GAAGATGCTTGAGGCGGAGATGGTGGTTCCGAGCATGACGAATCGGCCTATGTACAGCATGGTGGAAGGAATGGATGATGTAGAGATATCGATGGATAGC TTGGGATTCTCTTCTGGGTATCATCAGCCGTATGGAAGTATTGCTAGTGGTGGGACTGTCAAAGAAGAAGATTCTGATTCCAGGACATCAGAATCTTCTT AA
AA sequence Show only first row Show all	>Lus10008186 pacid=23173795 polypeptide=Lus10008186 locus=Lus10008186.g ID=Lus10008186.BGIv1.0 annot-version=v1.0 MSAVHHHLFLLFLLTLTPSILAQNNSNSTDPCPLDFSGLQRLIENSDIPTLDRTQACQNVRQGLRIVLSEYLQHTNQFLPPQSTADSCWRSYQRLIDSIS PNRSDIRTTCGFQTTWISQGCANVTNRQDFESRITRSELDRVRSSCSQSLENRAPCATCMTALSDGLHFTGTSIGNVCDCPVYPLIYAAAFVNQLGPTDR GTVKCLFLLDFPLKESNSSGSNHGRRTAILAGSIGGSCVGILILGLGIWIMRRKWKRIMQEKKEEMEMGLDARLVKFSYEEIKKATKNFSLDNIIGKGGF GNVYRGEFPDGTEVAVKRFKNCSAAGDESFAHEVAVIASIRHVNLVALIGYCIATTPLEGHQRMIICELMKNGSLHDHLFESKSSSKLSWTIRQKVALGT ARGLAYLHTGAQHTIIHRDIKAQNILLDETFEAKVADFGLAKSNTEGATHMSTRVAGTWGYLAPEYALYGQLTERSDVYSYGVLLLELLSGRKALIRVDA GDGLDTSQPCLVADWAWTLAKEGRALDVVEDGLPERGSEDVLERFVMVAILCSHPELHARPTMEQVVKMLEAEMVVPSMTNRPMYSMVEGMDDVEISMDS LGFSSGYHQPYGSIASGGTVKEEDSDSRTSESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008186 [exp]	0	1
AT3G14760			unknown protein		Lus10038145 [exp]	6.3	0.8103
AT4G23740			Leucine-rich repeat protein ki...		Lus10014943 [exp]	6.9	0.7635
AT1G24530			Transducin/WD40 repeat-like su...		Lus10011402 [exp]	10.1	0.7727
					Lus10043281 [exp]	11.5	0.7714
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10007355 [exp]	12.1	0.7777
AT1G71970			unknown protein		Lus10017920 [exp]	13.1	0.7379
AT1G13570			F-box/RNI-like superfamily pro...		Lus10006346 [exp]	15.1	0.7198
					Lus10040471 [exp]	17.7	0.6952
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040244 [exp]	23.4	0.6963
AT1G67400			ELMO/CED-12 family protein (.1...		Lus10037017 [exp]	23.8	0.7495

Compare expression of checked genes

Lus10008186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.