Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G48010 622 / 0 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G11050 337 / 2e-107 Protein kinase superfamily protein (.1) AT3G24540 260 / 2e-79 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G24550 260 / 5e-78 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G52290 249 / 3e-75 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G56140 257 / 2e-74 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 257 / 2e-74 Leucine-rich repeat transmembrane protein kinase (.1) AT4G32710 242 / 5e-74 PERK14 proline-rich extensin-like receptor kinase 14, Protein kinase superfamily protein (.1) AT1G01540 243 / 1e-73 Protein kinase superfamily protein (.1.2) AT3G09010 241 / 2e-73 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027970 [exp] 1084 / 0 AT2G48010 653 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042678 [exp] 687 / 0 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10042679 [exp] 650 / 0 AT2G48010 678 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027971 [exp] 622 / 0 AT2G48010 646 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10008186 [exp] 612 / 0 AT2G48010 647 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10027972 [exp] 592 / 0 AT2G48010 601 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029626 [exp] 578 / 0 AT2G48010 672 / 0.0 receptor-like kinase in in flowers 3 (.1) Lus10029711 [exp] 327 / 1e-103 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10001295 [exp] 321 / 6e-101 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136466 [exp] 674 / 0 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136400 [exp] 673 / 0 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 537 / 0 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 455 / 1e-154 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.017G132800 [exp] 358 / 1e-115 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.017G133000 [exp] 352 / 6e-113 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 347 / 1e-111 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 345 / 3e-110 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.011G073516 [exp] 272 / 5e-84 AT1G29730 644 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G032100 [exp] 261 / 2e-81 AT1G52540 451 / 3e-159 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008187 pacid=23173767 polypeptide=Lus10008187 locus=Lus10008187.g ID=Lus10008187.BGIv1.0 annot-version=v1.0 ATGATGTCATCCGCCCTCCTCCCCTTCATCCTCCTCCTCCTCCTCCTAGCTCAAACCACCGCCGCTCAAACCAACACCACTTCATGCCCACTCGACTTCT CCATCTTCCTCAACCTCGTCACCTCATCCTCCCCCCGCCTCCCCGTTGACAGCCCCCAACTCTGCAACCAACTCCGCCGCACCCTCCGCCTCCTCCACTC CGACTACCTCCGCCGGACCGGCACTTTCCTCCCGCCCCTCTCCTCCGCCGAATCCTGCTGGACTTCCTTCCAGCGCCTCGTCGACGGCTACCTCCCGAAT TTTGACGTCCGCTCCTCATGCGGATTCCAAACCAGCTGGATCTCCCAGGGCTGCCTCAACATAACCACAATCGACGATTTCCAAACCCTAGTTTCCAGAC CCTCACTCAACAACGTCGCGTTGAATTGCAATCAGTCGCTCGAGAACAGATCTCCTTGCGCATCTTGTACGACTGCTCTCTCCAGACTCCAGGCGCTGTA TTTCCCCCGGACTTCTTCCGTCGGGAACATCTCCGATTGCCAGGTTTATCCGTGGATCTACACTGCCGCCGTCGTCAATCAGCTCGGCCCTTCCGACCAG GGCACCGCCAGGTGCTTGTTCTCCCTCCATTTCTCCTCCGGTGAATCAAACCCTAGGAAGAAGAAATTAGTACTGATTTTATCCGCCTGCTTAGGATCTT TCGCTCTAGCTTTCCTTATCGTTGCTGTTTGGATTCATAAGATGAGAAAATCGAATAGGAAATCGAATAGGAAAGGGAAATTAGGGTATGCACGATTCAG ATCGATTTTCCGGAGTAAGACTCTGCTGCAGTTTACGATAGATGAAATTAAGAAGGCGACTAAGAACTTCTCTAGAGATAACATCATAGGGCTTGGAGGA TATGGGAATGTGTACAAAGGGATATTGTCCGACGGATCAGAAGTTGCAGTAAAGAGATTCAAGAACAGTTCAGCAGCAGGGGACGCAAGCTTTGCACACG AAGTCGAGGTGATCTCAAGTGTAAGGCATGTGAATTTGGTAGCCATGAAAGGCTACTGCATCGCCGAAGGACACCAGAGGATCATCATCACCGAGCTGGT GAAGAACGGCAGTCTCGCAGATCACTTATTCGGCGAGAAAAGATCGAAGCTGAGCTGGCCGACTCGTCAGAAGATTGCGCTGGGGATGGCTAGAGGATTA GCTTACTTGCACTACGGGGCACAGCCAGGGATCATCCACCGGGATATAAAGGCGAGCAATGTCTTGCTGGACGAGATGTTCGAGGCGAAAGTTGCTGATT TTGGGCTGGCGAAGTTTAATCCGGAAGGTATGAGTCATTTGAGCACAAGAGTTGCGGGGACGATCGGGTATGTGGCTCCTGAGTATGCTTTGTACGGACA GGTGACGGAGAGGAGCGATGTTTATAGTTACGGAGTGGTGTTGCTCGAGTTGTTGAGCGGGAACAAGGCGATAACGAAAGGTTCGGAGGATGGGAGCGAT CCGAGTTTGTTGACCGATTGGGCGTGGTCGATGGTTAGAGAAGGAAGAGCTGTGGGCGTTGTGGAGGAGGGGATTTCGGAGGAAGAGTGTGTGGATAGTG ATGTGCTGGAGAGGTATGTGATGGTTGCTGTACTTTGTACGCACCCGCAGCTTCATGCTCGGCCGGCGATGGATCAGGTGGTGAAGATGTTGGAGGCTGA GCTTTGTGTTCCAGAGATCCCAGAACGGCCGGGGATTCTGGTGGATAATATGGATAGATTGATGGGGAGTGAGCAGCAGGTGTTTGATCCTTCTGGTTCT GGCCGGAGGATGTGA
AA sequence Show only first row Show all	>Lus10008187 pacid=23173767 polypeptide=Lus10008187 locus=Lus10008187.g ID=Lus10008187.BGIv1.0 annot-version=v1.0 MMSSALLPFILLLLLLAQTTAAQTNTTSCPLDFSIFLNLVTSSSPRLPVDSPQLCNQLRRTLRLLHSDYLRRTGTFLPPLSSAESCWTSFQRLVDGYLPN FDVRSSCGFQTSWISQGCLNITTIDDFQTLVSRPSLNNVALNCNQSLENRSPCASCTTALSRLQALYFPRTSSVGNISDCQVYPWIYTAAVVNQLGPSDQ GTARCLFSLHFSSGESNPRKKKLVLILSACLGSFALAFLIVAVWIHKMRKSNRKSNRKGKLGYARFRSIFRSKTLLQFTIDEIKKATKNFSRDNIIGLGG YGNVYKGILSDGSEVAVKRFKNSSAAGDASFAHEVEVISSVRHVNLVAMKGYCIAEGHQRIIITELVKNGSLADHLFGEKRSKLSWPTRQKIALGMARGL AYLHYGAQPGIIHRDIKASNVLLDEMFEAKVADFGLAKFNPEGMSHLSTRVAGTIGYVAPEYALYGQVTERSDVYSYGVVLLELLSGNKAITKGSEDGSD PSLLTDWAWSMVREGRAVGVVEEGISEEECVDSDVLERYVMVAVLCTHPQLHARPAMDQVVKMLEAELCVPEIPERPGILVDNMDRLMGSEQQVFDPSGS GRRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	0	1
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10017165 [exp]	2.2	0.9459
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	3.2	0.9547
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Lus10020136 [exp]	3.5	0.9516
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	3.5	0.9402
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10013805 [exp]	4.5	0.9415
AT4G25030			unknown protein		Lus10036513 [exp]	6.0	0.9312
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	6.9	0.9510
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	9.4	0.9474
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	9.9	0.9386
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	10.6	0.9237

Compare expression of checked genes

Lus10008187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.