Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63010 111 / 7e-31 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 103 / 4e-28 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 96 / 6e-25 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027969 [exp] 121 / 1e-34 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10000928 [exp] 97 / 2e-25 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 96 / 8e-25 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10018963 [exp] 85 / 2e-21 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213100 [exp] 115 / 2e-32 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 114 / 3e-32 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 109 / 2e-30 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 109 / 5e-30 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008188 pacid=23173759 polypeptide=Lus10008188 locus=Lus10008188.g ID=Lus10008188.BGIv1.0 annot-version=v1.0 ATGGCTGGAAGTAATGAAGTCAATCTCAATGAATCCAAGAGGGTGGTTCCGTTGAACACATGGGTACTGATTTCCAACTTCAAGCTAGCGTACAACCTCC TCCGCCGTCCGGACGGCTCATTCAACCGCGACCTGGCGGAGTTTCTCGACCGGAAAGTCCCCGCCAATACCATCCCGNNNNNNNNNNNNNNNNTACCTGC TCGCCGGTGTCTCCCCATTCACCCGTGTGAACCTATCTCCTGGCCTACCAAACCGGGTCTCCCGACCCGCCCCTGA
AA sequence Show only first row Show all	>Lus10008188 pacid=23173759 polypeptide=Lus10008188 locus=Lus10008188.g ID=Lus10008188.BGIv1.0 annot-version=v1.0 MAGSNEVNLNESKRVVPLNTWVLISNFKLAYNLLRRPDGSFNRDLAEFLDRKVPANTIPXXXXXXPARRCLPIHPCEPISWPTKPGLPTRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	0	1
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	1.0	0.9706
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	1.7	0.9625
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Lus10043113 [exp]	3.2	0.9598
AT1G28120			unknown protein		Lus10026630 [exp]	4.2	0.9590
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	6.8	0.9645
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	7.5	0.9586
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	7.5	0.9541
AT5G15320			unknown protein		Lus10018064 [exp]	8.1	0.9492
					Lus10026740 [exp]	8.7	0.9609
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	8.9	0.9521

Compare expression of checked genes

Lus10008188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.