Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63010 206 / 7e-67 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 198 / 6e-64 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 192 / 8e-62 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT5G23530 86 / 8e-21 ATCXE18 carboxyesterase 18 (.1) AT5G16080 63 / 1e-12 ATCXE17 carboxyesterase 17 (.1) AT5G06570 63 / 1e-12 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G68620 55 / 8e-10 alpha/beta-Hydrolases superfamily protein (.1) AT5G14310 45 / 4e-06 ATCXE16 carboxyesterase 16 (.1) AT2G45600 38 / 0.0007 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027969 [exp] 265 / 6e-90 AT3G63010 566 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Lus10002254 [exp] 189 / 2e-60 AT5G27320 550 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10000928 [exp] 188 / 4e-60 AT5G27320 553 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10013774 [exp] 106 / 2e-28 AT5G23530 315 / 2e-106 carboxyesterase 18 (.1) Lus10039162 [exp] 96 / 2e-24 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10018963 [exp] 88 / 5e-22 AT5G27320 365 / 3e-127 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Lus10013771 [exp] 76 / 1e-18 AT5G23530 96 / 4e-25 carboxyesterase 18 (.1) Lus10036168 [exp] 71 / 2e-15 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 69 / 2e-14 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G213100 [exp] 222 / 2e-73 AT3G63010 578 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.014G135900 [exp] 213 / 4e-70 AT3G63010 537 / 0.0 GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) Potri.013G028700 [exp] 198 / 6e-64 AT5G27320 608 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G040600 [exp] 192 / 1e-61 AT5G27320 570 / 0.0 GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) Potri.019G014306 [exp] 120 / 1e-34 AT5G23530 0 / 1 carboxyesterase 18 (.1) Potri.019G014302 [exp] 120 / 6e-34 AT5G23530 329 / 3e-112 carboxyesterase 18 (.1) Potri.004G092500 [exp] 108 / 3e-29 AT5G23530 388 / 3e-135 carboxyesterase 18 (.1) Potri.001G459400 [exp] 106 / 2e-28 AT5G23530 327 / 1e-111 carboxyesterase 18 (.1) Potri.004G101400 [exp] 67 / 4e-14 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.009G155800 [exp] 66 / 1e-13 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10008189 pacid=23173766 polypeptide=Lus10008189 locus=Lus10008189.g ID=Lus10008189.BGIv1.0 annot-version=v1.0 ATGTTCGGCGGGCAGGAGAGGACCGAATCGGAAAGGTGCTTAGACGGGAAGTACTTCGTCACGATTCAAGATAGGGATTGGTACTGGAGGGCCTTTTTGC CGGAAGGTGAGGATAGAGATCATCCAGCCGTTAATATCTTCGGTCCCAGGAGTAAGAAATTGGACGGTGGGATTAAGCTTCCGAAGAGTTTGGTAGTTGT GGCCGGTTTGGACCTGATCCAAGATTGGCAATTGGCGTACGTTGATGGCATGGAGAAAGCTGGGCATCAAGTGAAGCTGATTTTTCTCCAGGAAGCTACA ATTGGGTTCTATTTCTTGCCCAATAACAAGCATTTCTACTGCCTTATGGAGGAAATCAAGAACTTTGTCAATCCTTCTAACTAA
AA sequence Show only first row Show all	>Lus10008189 pacid=23173766 polypeptide=Lus10008189 locus=Lus10008189.g ID=Lus10008189.BGIv1.0 annot-version=v1.0 MFGGQERTESERCLDGKYFVTIQDRDWYWRAFLPEGEDRDHPAVNIFGPRSKKLDGGIKLPKSLVVVAGLDLIQDWQLAYVDGMEKAGHQVKLIFLQEAT IGFYFLPNNKHFYCLMEEIKNFVNPSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	0	1
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10027969 [exp]	1.7	0.9549
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	1.7	0.9672
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	4.5	0.9610
AT2G38640			Protein of unknown function (D...		Lus10007423 [exp]	5.9	0.9387
AT1G11320			unknown protein		Lus10013574 [exp]	6.6	0.9476
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10034619 [exp]	7.7	0.9518
AT1G09740			Adenine nucleotide alpha hydro...		Lus10015896 [exp]	8.7	0.9441
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008188 [exp]	8.9	0.9521
AT4G25030			unknown protein		Lus10036514 [exp]	9.5	0.9480
AT3G61920			unknown protein		Lus10003193 [exp]	10.6	0.9139

Compare expression of checked genes

Lus10008189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.