Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03440 527 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G03010 526 / 0 RNI-like superfamily protein (.1) AT3G17640 235 / 1e-73 Leucine-rich repeat (LRR) family protein (.1) AT3G59510 141 / 9e-38 Leucine-rich repeat (LRR) family protein (.1) AT3G51740 132 / 2e-33 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT2G26330 125 / 5e-31 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G62230 125 / 6e-31 ERL1 ERECTA-like 1 (.1.2) AT5G07180 117 / 3e-28 ERL2 ERECTA-like 2 (.1) AT3G56100 114 / 2e-27 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G12610 109 / 2e-26 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029622 [exp] 533 / 0 AT1G03440 534 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10031601 [exp] 451 / 2e-158 AT1G03440 463 / 2e-163 Leucine-rich repeat (LRR) family protein (.1) Lus10042681 [exp] 219 / 4e-69 AT4G03010 205 / 1e-63 RNI-like superfamily protein (.1) Lus10027968 [exp] 197 / 3e-63 AT1G03440 160 / 2e-49 Leucine-rich repeat (LRR) family protein (.1) Lus10022679 [exp] 112 / 1e-26 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10025578 [exp] 110 / 1e-26 AT3G59510 388 / 6e-133 Leucine-rich repeat (LRR) family protein (.1) Lus10031689 [exp] 112 / 2e-26 AT5G62230 1437 / 0.0 ERECTA-like 1 (.1.2) Lus10022678 [exp] 110 / 5e-26 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10019356 [exp] 108 / 9e-26 AT3G59510 377 / 1e-128 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136100 [exp] 547 / 0 AT1G03440 541 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.011G023500 [exp] 268 / 3e-86 AT3G17640 350 / 2e-118 Leucine-rich repeat (LRR) family protein (.1) Potri.004G001000 [exp] 261 / 2e-83 AT3G17640 386 / 1e-132 Leucine-rich repeat (LRR) family protein (.1) Potri.017G028600 [exp] 128 / 5e-33 AT3G59510 372 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) Potri.015G132200 [exp] 128 / 5e-32 AT5G62230 1404 / 0.0 ERECTA-like 1 (.1.2) Potri.017G028400 [exp] 122 / 1e-30 AT3G59510 366 / 6e-124 Leucine-rich repeat (LRR) family protein (.1) Potri.006G104300 [exp] 123 / 2e-30 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.005G234400 [exp] 119 / 1e-29 AT5G66330 412 / 3e-142 Leucine-rich repeat (LRR) family protein (.1) Potri.016G126300 [exp] 119 / 6e-29 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.001G269800 [exp] 114 / 2e-28 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10008190 pacid=23173782 polypeptide=Lus10008190 locus=Lus10008190.g ID=Lus10008190.BGIv1.0 annot-version=v1.0 ATGGCGACATCCTCCTTCTACATTGTCAATCTGTTAATGTCACTCTGTTTTTTCTTCTCCGGCGTCAAATCAATCCTCGACCCGGTCGATTTCCTGGCAT TGCAATCGATCAGGAAATCAATGGACGACATGCCGGGATCCAACTTCTTCTCCACTTGGGATTTCACCTCCGACCCCTGCAACTTCGCCGGCATTTACTG CGATTCCGACCGGGTCATCGCCCTCAACCTGGGCGACCCGAGTGCCGGATCCCCGGGTCTCATTGGCAGGATCGATTCTTCCATCGGTAAGCTCACTTCC CTCGCCGAGCTCACAATAGTACCGGGTCGGATTATGGGGTCCATACCCGAATCCATCTCGCAGCTCTACAATCTCCGGTTCCTCGCCGTCAGCCGGAACT TCCTCTCCGGCGACATCCCGGTGTCCCTCGGACAGCTGTCAAATCTCAAAACGCTTGATCTCAGCTACAATCAGCTGACCGGACTTGTCCCGCCGTCGAT CGGATCCATCTCCGGACTATCCAATCTAATCCTCTGCCACAACAAGCTATCCGGGTCGGTCCCGACATTCACTTCCCAAACTCTGACCCGACTCGATTTG TCTCACAACCAACTCAACGGCACGATTCTTCCTTCTTCCTTACCTCCTTCACTTCAGTACCTATCACTTTCCAAGAACCGACTGGTCGGACCGGTGGATC AGGTTGTGACCCGGATGGACCAGCTCAACCACCTCGATCTGAGCATGAACCAGTTCTCGGGTTGCATCCCGGGTATAGTATTCGGGTTCCCCATCGCCAA CCTCCAATTACAGAGAAACTCATTCGCCGGTCTGGTTCAGCCAGGGGACCAAGTATCGATCGCGACGGTCGATCTCAGCTACAACAGATTCTCCGGTCCG ATTTCTCCCATGTTCTCAACCGTACAGAACTTGTACCTGAACAATAACCGGTTCAGCGGTGAGGTCCCCGGGAGCCTTGTGGACCGGTTGATGGCGGCCG GGATGGAGACTCTGTATCTGCAGCATAACTATCTGACGGGGATAGAGATTAATCCGACGGCGGAGATTCCGGTGAGTAGCGCGCTGTGTTTGCAGTACAA TTGCATGGTGCCGCCGGTGCAGACTCCTTGCCCGTTGAAGGCCGGGCAGCAGAAGACTAGGCCGACCGATCAGTGCAGCGAGTGGAGAGGGTAA
AA sequence Show only first row Show all	>Lus10008190 pacid=23173782 polypeptide=Lus10008190 locus=Lus10008190.g ID=Lus10008190.BGIv1.0 annot-version=v1.0 MATSSFYIVNLLMSLCFFFSGVKSILDPVDFLALQSIRKSMDDMPGSNFFSTWDFTSDPCNFAGIYCDSDRVIALNLGDPSAGSPGLIGRIDSSIGKLTS LAELTIVPGRIMGSIPESISQLYNLRFLAVSRNFLSGDIPVSLGQLSNLKTLDLSYNQLTGLVPPSIGSISGLSNLILCHNKLSGSVPTFTSQTLTRLDL SHNQLNGTILPSSLPPSLQYLSLSKNRLVGPVDQVVTRMDQLNHLDLSMNQFSGCIPGIVFGFPIANLQLQRNSFAGLVQPGDQVSIATVDLSYNRFSGP ISPMFSTVQNLYLNNNRFSGEVPGSLVDRLMAAGMETLYLQHNYLTGIEINPTAEIPVSSALCLQYNCMVPPVQTPCPLKAGQQKTRPTDQCSEWRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10008190 [exp]	0	1
AT5G66330			Leucine-rich repeat (LRR) fami...		Lus10028359 [exp]	1.0	0.9187
AT1G01900		SBTI1.1, ATSBT1...	subtilase family protein (.1)		Lus10041382 [exp]	2.8	0.8557
AT2G41820			Leucine-rich repeat protein ki...		Lus10012193 [exp]	3.9	0.8574
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10013009 [exp]	3.9	0.8097
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	4.7	0.8623
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	8.5	0.8353
AT1G03440			Leucine-rich repeat (LRR) fami...		Lus10027968 [exp]	9.2	0.7909
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10016533 [exp]	9.2	0.8163
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	11.0	0.8202
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	12.2	0.8458

Compare expression of checked genes

Lus10008190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.