Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29930 441 / 2e-158 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) AT1G29920 440 / 6e-158 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 440 / 6e-158 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT2G34420 439 / 9e-158 LHCB1.5, LHB1B2 PHOTOSYSTEM II LIGHT HARVESTING COMPLEX GENE 1.5, photosystem II light harvesting complex gene B1B2 (.1) AT2G34430 436 / 2e-156 LHCB1.4, LHB1B1 light-harvesting chlorophyll-protein complex II subunit B1 (.1) AT3G27690 414 / 1e-147 LHCB2.3, LHCB2:4 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) AT2G05070 408 / 2e-145 LHCB2.2 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) AT2G05100 405 / 2e-144 LHCB2.3, LHCB2.1 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) AT5G54270 340 / 1e-118 LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, LHCB3*1, light-harvesting chlorophyll B-binding protein 3 (.1) AT1G76570 204 / 3e-64 Chlorophyll A-B binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027966 [exp] 509 / 0 AT1G29910 446 / 2e-160 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10042219 [exp] 499 / 0 AT1G29930 444 / 1e-159 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10008594 [exp] 498 / 0 AT1G29930 445 / 4e-160 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10001169 [exp] 433 / 2e-155 AT3G27690 484 / 1e-175 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10001741 [exp] 431 / 3e-154 AT3G27690 481 / 1e-174 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.3 (.1) Lus10007362 [exp] 395 / 9e-141 AT1G29930 370 / 5e-131 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1) Lus10038490 [exp] 368 / 4e-130 AT1G29910 337 / 2e-118 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) Lus10037875 [exp] 347 / 4e-121 AT5G54270 460 / 3e-166 light-harvesting chlorophyll B-binding protein 3 (.1) Lus10038575 [exp] 346 / 9e-121 AT5G54270 462 / 9e-167 light-harvesting chlorophyll B-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G079500 [exp] 457 / 1e-164 AT2G34430 480 / 6e-174 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239300 [exp] 454 / 2e-163 AT2G34430 485 / 4e-176 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.005G239200 [exp] 452 / 1e-162 AT2G34430 484 / 2e-175 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.002G189300 [exp] 448 / 3e-161 AT2G34430 448 / 2e-161 light-harvesting chlorophyll-protein complex II subunit B1 (.1) Potri.014G165100 [exp] 416 / 1e-148 AT2G05100 507 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.1 (.1) Potri.002G221400 [exp] 413 / 2e-147 AT2G05070 499 / 0.0 LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, photosystem II light harvesting complex gene 2.2 (.1) Potri.001G407100 [exp] 347 / 2e-121 AT5G54270 478 / 2e-173 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.011G126700 [exp] 343 / 2e-120 AT5G54270 446 / 3e-161 light-harvesting chlorophyll B-binding protein 3 (.1) Potri.005G258600 [exp] 209 / 6e-66 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1) Potri.019G063101 [exp] 204 / 6e-65 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10008191 pacid=23173765 polypeptide=Lus10008191 locus=Lus10008191.g ID=Lus10008191.BGIv1.0 annot-version=v1.0 ATGGCCGCATCAACAATGGCAGCTCTCTCCTCCTCTACATTCTCCGGCAAGACTGCCGGAGCTTCCCAAAAGAGTAGCCCTGCTCAGCTATGGGGAACTA GCCGTTTCTTGATGAGGAAAACCTCCGCCAAGGCTAAACAAGTTTCGTCCGGAAGCCCATGGTACGGCCCAGACCGAGTTAAGTACTTGGGCCCATTCTC CGGCGAGGCCCCTTCTTACTTGACAGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCCGGCCTATCCGCCGACCCGGAGACATTCGCCAAGAATAGG GAGCTGGAAGTGATCCACTGCAGGTGGGCCATGCTCGGAGCCCTCGGGTGCGTCTTTCCGGAACTGTTATCCCGAAACGGAGTTAAGTTCGGAGAGGCTG TGTGGTTCAAGGCCGGAGCCCAAATCTTCAGCGAAGGTGGGCTTGACTATTTGGGTAACCCTAGCTTGGTCCACGCCCAAAGTATATTGGCTATTTGGGC CTGCCAGGTTATTCTCATGGGCGCTGTTGAAGGATACCGGGTTGCTGGTGGCCCGCTGGGGGAGGTTGTTGACCCGCTTTATCCCGGTGGTAGCTTTGAC CCATTGGGATTGGCTGATGACCCGGAGGCGTTTGCGGAGTTGAAGGTGAAGGAGATTAAGAACGGAAGGTTGGCTATGTTTTCGATGTTTGGATTCTTCG TCCAGGCCATCGTTACTGGGAAGGGACCTTTGGAGAACTTGGCTGACCATATCGCAGATCCGGTCAATAACAATGCATGGGCTTTCGCCACCAACTTTGT CCCGGGAAAGTGA
AA sequence Show only first row Show all	>Lus10008191 pacid=23173765 polypeptide=Lus10008191 locus=Lus10008191.g ID=Lus10008191.BGIv1.0 annot-version=v1.0 MAASTMAALSSSTFSGKTAGASQKSSPAQLWGTSRFLMRKTSAKAKQVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNR ELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDPLYPGGSFD PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29910		AB180, LHCB1.2,...	LIGHT HARVESTING CHLOROPHYLL A...		Lus10008191 [exp]	0	1
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10006191 [exp]	4.9	0.8363
AT2G20830			transferases;folic acid bindin...		Lus10039789 [exp]	6.3	0.8403
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	7.3	0.8706
AT1G68470			Exostosin family protein (.1)		Lus10013701 [exp]	8.4	0.7979
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	8.5	0.8679
AT3G02450			cell division protein ftsH, pu...		Lus10003049 [exp]	9.7	0.8709
AT1G44446		ATCAO, CH1	CHLOROPHYLL A OXYGENASE, Pheop...		Lus10042718 [exp]	13.5	0.8628
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10037875 [exp]	13.6	0.8693
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	15.7	0.8636
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	18.3	0.8537

Compare expression of checked genes

Lus10008191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.