Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35960 461 / 5e-161 Protein kinase family protein (.1) AT3G05140 407 / 4e-139 RBK2 ROP binding protein kinases 2 (.1) AT5G18910 403 / 6e-137 Protein kinase superfamily protein (.1) AT5G65530 377 / 2e-127 Protein kinase superfamily protein (.1) AT5G10520 353 / 4e-118 RBK1 ROP binding protein kinases 1 (.1) AT2G18890 332 / 1e-110 Protein kinase superfamily protein (.1.2) AT5G57670 316 / 4e-102 Protein kinase superfamily protein (.2) AT1G21590 248 / 1e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 239 / 5e-74 Protein kinase superfamily protein (.1.2.3) AT1G77280 244 / 6e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012776 [exp] 417 / 8e-141 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10034000 [exp] 415 / 2e-139 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 383 / 3e-129 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10035949 [exp] 351 / 1e-116 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10006957 [exp] 325 / 1e-108 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10012727 [exp] 331 / 9e-108 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10019990 [exp] 329 / 2e-106 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10025713 [exp] 294 / 1e-95 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10000968 [exp] 256 / 1e-77 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G136300 [exp] 518 / 0 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.010G027301 [exp] 416 / 2e-141 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.013G028100 [exp] 407 / 7e-139 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.007G011700 [exp] 363 / 8e-122 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.006G166600 [exp] 336 / 2e-112 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 334 / 7e-112 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.018G096100 [exp] 331 / 1e-107 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 330 / 3e-107 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.008G197800 [exp] 251 / 2e-78 AT5G18910 348 / 2e-115 Protein kinase superfamily protein (.1) Potri.007G102400 [exp] 254 / 4e-77 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10008192 pacid=23173797 polypeptide=Lus10008192 locus=Lus10008192.g ID=Lus10008192.BGIv1.0 annot-version=v1.0 ATGGGGAAGAAGAAGAAGGAGATTGAGTCGAGCTCTCCGGTGGGAGTTTTGGAAGACTACCTCAGAAGCGAAGCGGAGGAAGAGGATCATCACTCGTCGG ACGCCTCTTTCGATAATTCCCCAACTCTTCACCGGAGCAGTTCCAAATCCGCCTGGAATGATATCGTCCATCATCTCTTCCGCACCAAATCCGGCAAAAA AACAATCGATAAGAAGAATAATAATCCCAATCCTACCCCTCAGTTGGCCGCCTTGAAGAAGCAGTTCTCGTTTCGTAGCTTCAGCTTCAGAGAACATCGA TTCTCCTCCGTCGTACCCAACTTCTTCCCCACCACCACCGCCGCCGGCAACAATTCCTTCTCCTCTTCCTCGAATTTCACCCTCTCCGAGCTCCAATTCG CTACCGACAACTTCAGCCCAGCGAATCTGATCGGGAAAGGCGGGTATGCGGAGGTGTACAAGGGATGTTTACGGAACGGGAAGTTGGTCGCGATTAAACG GCTGACGAGAGGGACTCCCGACGAGATGACGGCGGATTTCCTGTCGGAGCTCGGAATCATGGCGCACGTCAAGCACCCAAACACCGCCAAATTGATCGGA TACGGCGTCGACGGCGGGTTGCATCTCGTCCTCCAACTCTCTTCCCGTGGCAGTCTAGCTTCTTCCCTACACGGTTCGAAGGAGTGTTTGAGCTGGGAGG TTAGGTACAAGATTGCAATGGGGACCGCAGAAGGGTTAGTGTATCTACATGGAGGATGCCAAAGAAGAATCATTCATAGAGATATCAAAGCTGCCAATAT TCTTCTTACAGAAGACTTTGAGCCTCAGATTTGCGATTTCGGGTTGGCGAAGTGGCTCCCGGAGCATTGGACCCATCACACCGTGTCCACATTCGAGGGC ACTTTCGGGTATCTGGCGCCGGAGTTTTTGATGCACGGGATAGTGGACGAGAAGACGGATGTGTTCGCGTACGGTGTGCTGCTGCTGGAGCTAGTTACGG GTCGTCGGGCTCTCGACTACAAAGAGCAGAGCCTTGTATTGTGGGCAAAGCCATTGCTGAAGAAGAGTGACATAAGGGAGCTAGTAGATCCAGCACTTGG GAATGCTTACGATGCAAGGCAGGTTAACCTGATGCTCGGAGCGGCCGCTCTTTGCATTCAGCAGTCTGCAATTCGGAGGCCGTTCATGCCTCAGGTGGAG CAAGTGTTGAGAGGGAACGTGAGTTGCTTGAAGTCGACGAAGAAGTGTAAATTGCCATTTTTCAGAAGAGCATTGCGGGAAGAGTTGCTCAAGGCAGAGG AGAACCAACTATTGTCCAATAGGGTTTCAATTTCACAAGCTTAA
AA sequence Show only first row Show all	>Lus10008192 pacid=23173797 polypeptide=Lus10008192 locus=Lus10008192.g ID=Lus10008192.BGIv1.0 annot-version=v1.0 MGKKKKEIESSSPVGVLEDYLRSEAEEEDHHSSDASFDNSPTLHRSSSKSAWNDIVHHLFRTKSGKKTIDKKNNNPNPTPQLAALKKQFSFRSFSFREHR FSSVVPNFFPTTTAAGNNSFSSSSNFTLSELQFATDNFSPANLIGKGGYAEVYKGCLRNGKLVAIKRLTRGTPDEMTADFLSELGIMAHVKHPNTAKLIG YGVDGGLHLVLQLSSRGSLASSLHGSKECLSWEVRYKIAMGTAEGLVYLHGGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPEHWTHHTVSTFEG TFGYLAPEFLMHGIVDEKTDVFAYGVLLLELVTGRRALDYKEQSLVLWAKPLLKKSDIRELVDPALGNAYDARQVNLMLGAAALCIQQSAIRRPFMPQVE QVLRGNVSCLKSTKKCKLPFFRRALREELLKAEENQLLSNRVSISQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35960			Protein kinase family protein ...		Lus10008192 [exp]	0	1
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10015525 [exp]	1.0	0.9102
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10032758 [exp]	5.9	0.8698
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Lus10026058 [exp]	14.2	0.8735
					Lus10043485 [exp]	16.5	0.9043
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10010268 [exp]	17.4	0.9005
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10041601 [exp]	22.7	0.9010
AT4G33440			Pectin lyase-like superfamily ...		Lus10003589 [exp]	25.4	0.8854
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	26.5	0.8961
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	28.5	0.8085
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Lus10029245 [exp]	28.6	0.8954

Compare expression of checked genes

Lus10008192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.