Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28850 758 / 0 Calcium-binding EF-hand family protein (.1.2) AT5G28900 757 / 0 Calcium-binding EF-hand family protein (.1) AT1G54450 744 / 0 Calcium-binding EF-hand family protein (.1) AT5G44090 737 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 678 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 89 / 9e-19 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027963 [exp] 1041 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 952 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10021174 [exp] 938 / 0 AT5G28850 804 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 933 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10011811 [exp] 931 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 704 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 686 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 665 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 661 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019500 [exp] 814 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 810 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 759 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 736 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.010G022300 [exp] 91 / 4e-19 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 87 / 5e-18 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10008193 pacid=23173768 polypeptide=Lus10008193 locus=Lus10008193.g ID=Lus10008193.BGIv1.0 annot-version=v1.0 ATGGAAGGTGTCGTATCCACCGGCGACGTGGCCGCTTTCAACCCGGACGTCCTCCAGCTCCCGGAATTGTCACCCTTGGCCTTGAAAGCTAATCCTTTCC TCCCCGGGCAACTCTTCTCCCAGTGGCTTTCCCTTGCCGATACTTCTAGATTGGTCAAATCCTTGCTCTCTGCGGCTAAGACTGGGGAGCCGCTGAATGC TGTTGGAAATTCTAGCAGTACAAATGGTGGTTGTGGCAGTCCAATACCATCCATGTTTCCTTCTGGAAGCACTCCTCCGCTTTCGCCTCGTAGCGTCTCT GGTTCACCTCGCCATGTGAAACCGAGAGCTGGTCTTTCTACTCTAGGTTCGCCACTAAAAGTGATCAATGAGCCGGTGCGAGAAGTCATTCCTCAGTTTT ACTTTAAAAATGGCCGGCTGCCTCGAGACGAGACAAGACGGCAATGCTTGTTTCAAATTGATCAACATTTTCATGCTCACGAGAATGGAATGCAACAAAA TGAGTTTAAGACAGTTGCAAAGGATATATGCAAGCTTCCGTCTTTTTTCTCCACTGTACTGTTTAAAAGAATTGATATCAGCAATGTTGGCATGGTGACA AGGGATCAATTTGTTGACTATTGGGTTAAAGGGAATTTCTTGACGATGGATTTAGCTACTCAAATCTACACGATTCTCAAGCAAGCAGATCAGGAATACC TTAGTCAGGAGGATTTCAGACCTGTGCTACGAGAAATTTTGGCAACTCATCCAGGGTTGGAGTTTTTGCAGAGCACTCCTGAATTCCAAGAAAGATATGC TGAAACGGTCATATACAGAATATTTCATTATGTAAATAGATCTGGAACTGGGCATCTTGCCCTTAAGGAGTTAAAGCGTTCTAACTTGATTTCTGCAATG CAACAAGTGGAGGAGGAAGAAGATATTAATAAAGTTTTAAGGTACTTCTCGTATGAGCACTTCTATGTCATATACTGCAAATTCTGGGAGCTTGACACAG ATCATGATTTCTTCATCGACAAAGAGAACCTTATTCGATATGGCAACCATGCTCTTACCTACAGGATTGTTGATAGAGTATTTTCTCAGGTTGCAAGGAA ATTTAGAAGCAAGGTCGAAGGTAAGATGGGTTATGAAGATTTTGTTTACTTCATACTCTCGGAGGAGGATAAATCTTCTGCACCTGGCATAGAGTTCTGG TTTAATTGCATTGATCTAGATGGAAACGGTATCCTCACTTCCAATGAAATTCAATTCTTTTATGAAGAACAATTGCATCGAATGGAGTGCATGGCCCAAG AGCCGGTCCTGTTTGAAGATATATTGTGCCAGATCATTGATATGATTGGACCAGAGCATGAGGGTCTAGTCACATTGCGTGACATGAGGCGAACCAAGCT TGTCGGGCACGTGTTCAACATTCTTTTCAATCTCAATAAGTTCATTGCCTTTGAAAGCCGGGATCCTTTCCTAATTCGCCAGGCAAAGTGGGATCGTTTT GCACATAGAGAGTATATAAGGCTCTCGATGGAAGACGACGCAGAAGATGTGTCTAATGGAAGTGGAGACGTCTGGGACGAATTACTCGAGTCTCCCTTCT GA
AA sequence Show only first row Show all	>Lus10008193 pacid=23173768 polypeptide=Lus10008193 locus=Lus10008193.g ID=Lus10008193.BGIv1.0 annot-version=v1.0 MEGVVSTGDVAAFNPDVLQLPELSPLALKANPFLPGQLFSQWLSLADTSRLVKSLLSAAKTGEPLNAVGNSSSTNGGCGSPIPSMFPSGSTPPLSPRSVS GSPRHVKPRAGLSTLGSPLKVINEPVREVIPQFYFKNGRLPRDETRRQCLFQIDQHFHAHENGMQQNEFKTVAKDICKLPSFFSTVLFKRIDISNVGMVT RDQFVDYWVKGNFLTMDLATQIYTILKQADQEYLSQEDFRPVLREILATHPGLEFLQSTPEFQERYAETVIYRIFHYVNRSGTGHLALKELKRSNLISAM QQVEEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFFIDKENLIRYGNHALTYRIVDRVFSQVARKFRSKVEGKMGYEDFVYFILSEEDKSSAPGIEFW FNCIDLDGNGILTSNEIQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIGPEHEGLVTLRDMRRTKLVGHVFNILFNLNKFIAFESRDPFLIRQAKWDRF AHREYIRLSMEDDAEDVSNGSGDVWDELLESPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28850			Calcium-binding EF-hand family...		Lus10008193 [exp]	0	1
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	4.6	0.8348
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10013763 [exp]	7.7	0.8539
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	7.9	0.8513
AT2G32900		ATZW10	centromere/kinetochore protein...		Lus10035358 [exp]	11.8	0.7663
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	13.9	0.8500
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	14.1	0.8379
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005101 [exp]	16.9	0.8188
AT2G31660		EMA1, URM9, SAD...	UNARMED 9, SUPER SENSITIVE TO ...		Lus10025509 [exp]	18.0	0.8151
AT5G11040		AtTRS120	TRS120 (.1)		Lus10013164 [exp]	20.9	0.8456
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003545 [exp]	22.5	0.8269

Compare expression of checked genes

Lus10008193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.