Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04480 829 / 0 endoribonucleases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027962 [exp] 1295 / 0 AT3G04480 840 / 0.0 endoribonucleases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047400 [exp] 982 / 0 AT3G04480 944 / 0.0 endoribonucleases (.1) Potri.019G019600 [exp] 972 / 0 AT3G04480 941 / 0.0 endoribonucleases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0534 [flax] [poplar] YjgF-like PF01042 [flax] [poplar] Ribonuc_L-PSP Endoribonuclease L-PSP CL0039 [flax] [poplar] HUP PF01902 [flax] [poplar] Diphthami_syn_2 Diphthamide synthase
Representative CDS sequence Show only first row Show all	>Lus10008194 pacid=23173772 polypeptide=Lus10008194 locus=Lus10008194.g ID=Lus10008194.BGIv1.0 annot-version=v1.0 ATGAAGGTGGTGGCGTTGGTTAGCGGCGGCAAGGACAGCTGCTACGCCATGATGAAGTGCATCAAATACGGCCACGAGATCGTGGCGTTAGCTAATTTGA TGCCGGCCGATGAATCCGTCGACGAGCTGGATAGCTACATGTATCAAACCGTTGGTCATCAAATAGTAGTCAGCTACGCAGAATGCATAGGGGTGCCATT GCATCAGAAGCTGAACTACAAGATGACACATGGCGATGAGGTCGAAGATATGTTCGTCTTGTTGAAGGAGGTCAAGAGGCGGATACCTTCTGTAACTGCC GTATCTTCTGGTGCTATTGCATCAGATTACCAGAGGCTACGAGTAGAAAGTATTTGTTCAAGGTTAGGGCTTGTTTCTCTAGCATATTTATGGAAACAAG ATCAGTCATTGCTCCTTGATGAAATGATAGCAAACGAGATTGTGGCCATCACTGTGAAGGTGGCAGCAATGGGGTTGGTTCCTGGAAAGCATTTGGGTAA GGAAATATCATTTCTGAAGCCCCATCTCCATAAGTTGAAAGAGTTGTATGGATGTAATGTATGTGGAGAAGGGGGTGAATACGAGACTCTGACACTTGAC TGCCCACTCTTTGTTAATGCCAGAATTGTGCTGGACGAATCCCAGATATTGTTACACTCTCCGGACTCCATTGCTCCAGTTGGGATTCTCCATCCTTCAA AATTTCATTTGGAGAGGAAGGGAGAGTCTGTATGTGGCAACGATAGTACCCCCGTATCCCATCAGAAAGAAGGAGGTAATGTTATAGAGGTGCAGGGTGA CTGCCCAGAAGAAAGCGAGACTATTTGCCAGCCTTTTAGCAGCGAAACTGTTTCAGTTGAGCATTTAGATGATCGGCTTTGCATATCCAGGACAATTAAG GATAATACCTTTTCTATTTCTTGCTGGTTGCAAGATTCATCCAGAACTTCTCCAGGTCTAAAGGAAGATTTGGCCACCATTCTTGAGCGCATTGAATCAC AGCTTGCAGTATATGGCTTTGGCTGGGGGCATGCCCTATACATCCATCTCTATATTGCTGATATTAATGAATTTGCTAGTGCAAATGAGACATATGTGGC ATTTATTACACAGGAGAAGTGTCCTAATGGAGTTCCATCCCGCAGCACAATTGAACTTCCTTTGGTGCAAGCTGCCTTGGGGAAAGCCTACGTCGAAGTT CTAGTGGCGAACGACAATAGTAAAAATGTGTTACATGTTCAAAGTATCTCCTCCTGGGCACCTAGTTGCATTGGACCATATAGCCAGGCAACTTTTCACC GTGAGATACTTTATATGGCTGGGCAACTGGGGCTTCACCCACCTACGATGACTCTCTGCAATGGTGGTGCTAGTGCTGAGCTGGAACTAGCAGTACAAAA CAGTGAAGCAGTGGCAAAAAGCTTCAACTGTTCGATTTCCACCAATGCAATCTCGTTTACAGTCTATTGCTCGAATCGTATTCCAGCATCAGAGAGACAA GCGGTCGAAGATAAACAAAGATCTCTTCTTCGAGAAATGAGACTGCTCCAACTAGACCAAGGAAGCAAGTGCAAAGTTGTTGATCCTGTAGTCTTGTACG TCCTTGTGCCTGATCTTCCAAAAAGAGCATTGGTAGAAGTAAAACCCACACTCTTTGTTCCGGATTTGGACACCGATATCCCGGAGGTCGATGCTGGAAG CACGTCCTCCTGCATAGTTCCCAAGAGTTGGGGATTTGAGCGAGCAGACTGGCACGAAGCTTGCATTCAGAAATGTGTCATTAGTGGGAAGATATGCACA CTTCTTTTATCCATAACAACAGACCTCATCGCCAAGATATGTTCCAAGACTCTTGAAAAGAACGATCGTCTCACGAATGACCATCTCAAACAAGTTCTGC AGTTCTGTATCTACCTTCTGGATCAAGTGGTTACTGACTACTGTTTCACCTGGGAAGACATAATGAGCCTGAGACTGTATTTCCCGACCAGCCTCGGCTT GAAATTGGAGGCTCTGTCTGTCATGTTCAGAGATGTATTTGCTGAGACTGGCGCCTGCAGCACAGACAGCGAGCACTTGCTCAACGTAGTTCCAGTGTTG AGCGTTGGCAGATCAGCAGTAGCCATGGAGGATTTGCTTGTGTTTGAGTTATTGGCTCGGAAATCATAA
AA sequence Show only first row Show all	>Lus10008194 pacid=23173772 polypeptide=Lus10008194 locus=Lus10008194.g ID=Lus10008194.BGIv1.0 annot-version=v1.0 MKVVALVSGGKDSCYAMMKCIKYGHEIVALANLMPADESVDELDSYMYQTVGHQIVVSYAECIGVPLHQKLNYKMTHGDEVEDMFVLLKEVKRRIPSVTA VSSGAIASDYQRLRVESICSRLGLVSLAYLWKQDQSLLLDEMIANEIVAITVKVAAMGLVPGKHLGKEISFLKPHLHKLKELYGCNVCGEGGEYETLTLD CPLFVNARIVLDESQILLHSPDSIAPVGILHPSKFHLERKGESVCGNDSTPVSHQKEGGNVIEVQGDCPEESETICQPFSSETVSVEHLDDRLCISRTIK DNTFSISCWLQDSSRTSPGLKEDLATILERIESQLAVYGFGWGHALYIHLYIADINEFASANETYVAFITQEKCPNGVPSRSTIELPLVQAALGKAYVEV LVANDNSKNVLHVQSISSWAPSCIGPYSQATFHREILYMAGQLGLHPPTMTLCNGGASAELELAVQNSEAVAKSFNCSISTNAISFTVYCSNRIPASERQ AVEDKQRSLLREMRLLQLDQGSKCKVVDPVVLYVLVPDLPKRALVEVKPTLFVPDLDTDIPEVDAGSTSSCIVPKSWGFERADWHEACIQKCVISGKICT LLLSITTDLIAKICSKTLEKNDRLTNDHLKQVLQFCIYLLDQVVTDYCFTWEDIMSLRLYFPTSLGLKLEALSVMFRDVFAETGACSTDSEHLLNVVPVL SVGRSAVAMEDLLVFELLARKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	0	1
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10021147 [exp]	3.2	0.8027
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	5.3	0.8435
AT3G51290			Protein of unknown function (D...		Lus10013564 [exp]	6.2	0.7760
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	6.3	0.8311
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10037223 [exp]	11.5	0.8256
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	13.5	0.8268
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	15.5	0.7928
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	20.6	0.7517
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	21.0	0.7940
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	23.2	0.8011

Compare expression of checked genes

Lus10008194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.