Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04470 827 / 0 Ankyrin repeat family protein (.1) AT1G04780 617 / 0 Ankyrin repeat family protein (.1) AT3G24210 570 / 0 Ankyrin repeat family protein (.1) AT1G62050 350 / 2e-112 Ankyrin repeat family protein (.1) AT1G11740 331 / 1e-104 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029612 [exp] 913 / 0 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1) Lus10032775 [exp] 717 / 0 AT3G04470 698 / 0.0 Ankyrin repeat family protein (.1) Lus10011743 [exp] 621 / 0 AT1G04780 852 / 0.0 Ankyrin repeat family protein (.1) Lus10000752 [exp] 616 / 0 AT1G04780 863 / 0.0 Ankyrin repeat family protein (.1) Lus10027960 [exp] 599 / 0 AT3G04470 412 / 3e-139 Ankyrin repeat family protein (.1) Lus10027961 [exp] 455 / 2e-158 AT3G04470 409 / 3e-141 Ankyrin repeat family protein (.1) Lus10002942 [exp] 332 / 2e-105 AT1G62050 707 / 0.0 Ankyrin repeat family protein (.1) Lus10003524 [exp] 311 / 3e-99 AT1G62050 531 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019700 [exp] 929 / 0 AT3G04470 883 / 0.0 Ankyrin repeat family protein (.1) Potri.013G047500 [exp] 918 / 0 AT3G04470 881 / 0.0 Ankyrin repeat family protein (.1) Potri.001G051400 [exp] 640 / 0 AT1G04780 907 / 0.0 Ankyrin repeat family protein (.1) Potri.003G177000 [exp] 622 / 0 AT1G04780 862 / 0.0 Ankyrin repeat family protein (.1) Potri.011G004500 [exp] 338 / 6e-108 AT1G62050 588 / 0.0 Ankyrin repeat family protein (.1) Potri.004G013500 [exp] 337 / 2e-107 AT1G62050 558 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11904 [flax] [poplar] GPCR_chapero_1 GPCR-chaperone
Representative CDS sequence Show only first row Show all	>Lus10008195 pacid=23173775 polypeptide=Lus10008195 locus=Lus10008195.g ID=Lus10008195.BGIv1.0 annot-version=v1.0 ATGGAAGACTATTCAAAGTATTCTCACAGTCCTGCTCACTTGGCGGTTGCACGCCGCGATTATGCTAATCTGAGACGAATTATTGCCAACCTTCCACGGC TCGCCAGAGCTGGGGATGTTGCTACTGAGGAACAGTCTGTTGCTGCTGAAAAAGAAGCTGATGCTCTCTCGAGTGTTATAGATCGCAGGGATGTTCCTGG ACGGGAGACGCCTCTTCACCTTGCTGTTAAGTTTAGGGACCCGATATCGGCGGAGATCTTGATGGAAGCCGGTGCGGATTGGAGTCTGCAGAATGAGAAC GGGTGGAGTGCTCTTCAGGAAGCGGTTTGCACGAGGGAGGAGGCTATTTCCATGATAATTGCTCGTCACTATCAGCCGCTAGCCTGGGCGAAATGGTGTA GAAGACTTCCTCGTGTCGTTGCTTCGGCAGCTCGTATTCGTGATTTCTACATGGAGATTACTTTCCATTTCGAGAGTTCTGTTATTCCTTTCATCGGCCG TATTGCACCCTCAGATACTTATCGTATATGGAAGCGCGGTGCTAATCTTCGCGCTGATATGACACTCGCTGGGTTTGATGGGTTCCGGATTCAGAGATCG GATCAGACGTTCTTGTTTTTGGGGGATGGTTATTTGGCAGAGGATGGAGGAGGCACATCTTTATCGCCGGGTTCTTTGATTGTTCTTGCACATAAAGAAA AAGAGATAACGAATGCTTTGGAAGGATCGGGCGCGCAACCAACTGAAGCTGAAGTTGCCCATGAAGTTGCTCTCATGTCTCAAACTAATATGTATAGACC TGGGATCGATGTGACTCAGGCGGAACTGATCCCTCATCTGAATTGGAGACGGCAGGAGAAGACTGAAATTGTTGGAAACTGGAAGGCGAAGGTATATGAT ATGCTTAATGTGATGGTAAGTGTGAAGTCAAGACGGGTTCCTGGTGCTATGACTGATGAGGAACTTTTCGCCGAGGAGGATGCTGAAAGATTAGCAAATG GAGCAGATCAGGATGAATTCGGCGATGTGTTAACACCTGAAGAGAGAAAACAGTTAGACTCGGCTCTTCGTACAGGAAACTCAGATGGGGAAGAAGCTGG AGTGCTTGAGTCCAAAGAAAATGGTTCAGGAGGTCCATATGACAATGATAAGGAGAAAAAGGGCTGGTTTGCTTGGAAAAATAAAGGTGCCTCTGAAGAT CCTAAAAGAGGGAAAAAGTATTCTAAGTTGATACCTGAAGGTGGTAGCGAGCAGAAATCATTTGATCACCAGGAATCATCGTCCGAGTCTGGTTGGGAAG ATACAGTGGACGGGAGGAAGGTAAAGGATAAAAATGGCAAGAAGAAGAAGAAGAAAGGGCCGACCAGTGAGTCTAAGACCGAAAGCGAGTATAAAAAGGG TTTGCGACCTGTATTGTGGCTGACACCAGATTTTCCTTTGCAAACAGAGGAGCTACTGCCTCTGCTTGACATATTGGCTAATAAGGTAAAAGCTATCAGG AGACTTAGGGAGCTTTTGACTACTAAACTACCCTCTGGCACGTTTCCTGTCAAGGTTGCGATTCCTATTGTTCCAACTGTAAGGGTGATTGTCACATTCA CCAAGTTCGAGGATCTTCGTCCAGTAGAGGAGTTCTCAACACCTCTATCCAGCCCAACACATTTCCAAGACGCCAAGTCCAGGGAACTCGATGGGGGGTC AACAACATCTTGGATGTCGTGGATGAAAGGAAGCCGAGGTGGGCAATCAAGTGATAGTAGCGACAGCCACCGGTACAAAGATGAGGTCGACCCGTTCCAT ATACCTTCTGATTATATGTGGGTCGACATCAACGAGAAGAAAAGGCGGATGAAAGCTAAGAGAGCCAAGTCCAAGAAAAATAGGAAGCCACAGCAGGGTG CCGGAAGCGGAGGAGGAGATGGCTTGGCACATCAACAAAGTGAAAATGGTGAAGACTAG
AA sequence Show only first row Show all	>Lus10008195 pacid=23173775 polypeptide=Lus10008195 locus=Lus10008195.g ID=Lus10008195.BGIv1.0 annot-version=v1.0 MEDYSKYSHSPAHLAVARRDYANLRRIIANLPRLARAGDVATEEQSVAAEKEADALSSVIDRRDVPGRETPLHLAVKFRDPISAEILMEAGADWSLQNEN GWSALQEAVCTREEAISMIIARHYQPLAWAKWCRRLPRVVASAARIRDFYMEITFHFESSVIPFIGRIAPSDTYRIWKRGANLRADMTLAGFDGFRIQRS DQTFLFLGDGYLAEDGGGTSLSPGSLIVLAHKEKEITNALEGSGAQPTEAEVAHEVALMSQTNMYRPGIDVTQAELIPHLNWRRQEKTEIVGNWKAKVYD MLNVMVSVKSRRVPGAMTDEELFAEEDAERLANGADQDEFGDVLTPEERKQLDSALRTGNSDGEEAGVLESKENGSGGPYDNDKEKKGWFAWKNKGASED PKRGKKYSKLIPEGGSEQKSFDHQESSSESGWEDTVDGRKVKDKNGKKKKKKGPTSESKTESEYKKGLRPVLWLTPDFPLQTEELLPLLDILANKVKAIR RLRELLTTKLPSGTFPVKVAIPIVPTVRVIVTFTKFEDLRPVEEFSTPLSSPTHFQDAKSRELDGGSTTSWMSWMKGSRGGQSSDSSDSHRYKDEVDPFH IPSDYMWVDINEKKRRMKAKRAKSKKNRKPQQGAGSGGGDGLAHQQSENGED

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04470			Ankyrin repeat family protein ...		Lus10008195 [exp]	0	1
AT4G22960			Protein of unknown function (D...		Lus10014145 [exp]	11.7	0.7007
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	20.1	0.6942
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10025635 [exp]	21.7	0.7023
AT3G09320			DHHC-type zinc finger family p...		Lus10024377 [exp]	22.2	0.6625
AT1G69630			F-box/RNI-like superfamily pro...		Lus10037440 [exp]	25.1	0.6646
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10018960 [exp]	25.5	0.6869
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033817 [exp]	33.9	0.6797
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	50.0	0.6770
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	51.3	0.6389
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10018620 [exp]	61.0	0.6604

Compare expression of checked genes

Lus10008195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.