Plant FIBer expression Database

Lus10008196 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28910 665 / 0 unknown protein
AT5G28960 633 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027959
[exp]
1088 / 0 AT5G28910 702 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G019800
[exp]
820 / 0 AT5G28910 680 / 0.0 unknown protein
Potri.013G047600
[exp]
809 / 0 AT5G28910 668 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10008196 pacid=23173790 polypeptide=Lus10008196 locus=Lus10008196.g ID=Lus10008196.BGIv1.0 annot-version=v1.0
ATGGTGGAGGAGAAGGAGAAGTCAATAGAGAGAGTGGTTTCACAGAAGGCAATGGAGATGGGGAGTTCATTCCCATGTCAGATTTGTGTGGTGGGATTCC
TTTGTGGGGTTTGCCTTACTTCTCTGTTCCTTGCTGCTTTTACTTCTTTTGGCAGCTTTGGCTTTGGTTCTTCTTCTTCTGCTGCTGCTGCTACTGCTTT
CTCTGCACTTCCAGTTTCCACTAATTCCTCTTCTCGGTTCATCAATATGGTTACAACAAGCACAGAAGACTGCAAATTTCAGCTGAAGGGTACGGAGAGA
TTATCCGATTCAAGACAAGGAAGCGAAAGGGACGACGAACGAGTTTCACAACTCTACTCAGCTTGGAGCTCATTACTAAGTGAGGAAAGTACTGATGAGC
AGTCAAGCAAACCCACAGTAGTAGTACCAAATGCACCTCATTTCCAAAACTGCAAGTCAGCTGCAAAACTGAACTGGCGCCTCGATAATCGCGAGGCTGA
CGAGAACTATCCCCCGTGGACAACTTGGAAGGGACAGCTGGACATGTTCCCTGGATCAGCCAAGACCAGCAGCTTTAGGCATCAGTCTATATCTGAAGGT
GCATATCCTCCTTGGATCAGTGGATCAGATGAAGATAACTACCCTCTTACGCGACGAGTCCAGCGAGATATTTGGATGCATCAGCACCCGAAGAACTGCA
AGGAGGACCCGGATGTGAAGTTTCTGGTTGCGGACTGGGAGAGGCTCCCTGGGTTTGGGATTGGAGCTCAGTTTGCAGGAATGTGTGGACTTCTCGCCAT
TGCAATGAACGAGAAGCGTGTCCTTGTTACTAGCTACTACAATCGCGCTGATCATGATGGTTGTGAGGGCTCTTCACGGGGCAGCTGGTCTTGCTATTTC
TTTCCTGAGACATCACAAGAGTGTAGAGATAGAGCAGTTGAGCTTATGGCAGATAAAGGAGCTTGGGAGAAGGGAGTCATTACTTCAAAGGAAAGCTATA
AATCCAAGGAAATATGGACTGGAAGAACTCCAAGGCAATATGCTTTCTCTTTCAGGATATGGGGTGAGCCCTGGAGTTATCTACAGCCAACCACTGAAAT
CAATGGCAGTTTCGCCGCTCTTCACCGAAAAATGGATCGTCGATGGTGGAGAGCACAGGCGATCCGTTACTTGATGAGGTTCCAAACGGAATACACTTGC
CGGTTGATGAATTCTGCTCGACATGCTGCATTTGGTGAGGAAGCTGCAAAGATGGTAGTCAGCAACCTTGGTGAAGAATATTGGGACCAAAAGGATCAAG
CAAGTGACAGGAAATTGGGGGAAATGGAAGAGTACGTATGGTCAGATCAGAAACCATGGATCCCTAGACCATTACTGAGCATGCATGTGAGAATGGGAGA
CAAAGCATGCGAGATGAAACTTGTCGAATTTGATGGCTATATTCGCCTTGCTGACCGGATCAGGACACGCTTCCCGCATCTTAATAAAGTCTGGCTATCA
ACAGAGATGCAGGATGTGGTCGAGAAAACAAAGCAGTACAAGAAATGGAAGTTTTACTACACGAATGTGCTGAGGCAGATTGGGAACATGACGATGGCAG
CGTATGAGGCGAGTCTAGGGAGGGAGACGAGCACGAATTACCCGCTGGTGAATTTCCTGATGGCAACCGAGGCCGATTTCTTCGTGGGCGCATTGGGTTC
GACTTGGTGTTTCCTAATCGACGGGATGAGGAACACTGGAGGGAAAGTTATGGCTGGATACATGAGCGTCAACAAAGACCGATTCTGGTAG
AA sequence
>Lus10008196 pacid=23173790 polypeptide=Lus10008196 locus=Lus10008196.g ID=Lus10008196.BGIv1.0 annot-version=v1.0
MVEEKEKSIERVVSQKAMEMGSSFPCQICVVGFLCGVCLTSLFLAAFTSFGSFGFGSSSSAAAATAFSALPVSTNSSSRFINMVTTSTEDCKFQLKGTER
LSDSRQGSERDDERVSQLYSAWSSLLSEESTDEQSSKPTVVVPNAPHFQNCKSAAKLNWRLDNREADENYPPWTTWKGQLDMFPGSAKTSSFRHQSISEG
AYPPWISGSDEDNYPLTRRVQRDIWMHQHPKNCKEDPDVKFLVADWERLPGFGIGAQFAGMCGLLAIAMNEKRVLVTSYYNRADHDGCEGSSRGSWSCYF
FPETSQECRDRAVELMADKGAWEKGVITSKESYKSKEIWTGRTPRQYAFSFRIWGEPWSYLQPTTEINGSFAALHRKMDRRWWRAQAIRYLMRFQTEYTC
RLMNSARHAAFGEEAAKMVVSNLGEEYWDQKDQASDRKLGEMEEYVWSDQKPWIPRPLLSMHVRMGDKACEMKLVEFDGYIRLADRIRTRFPHLNKVWLS
TEMQDVVEKTKQYKKWKFYYTNVLRQIGNMTMAAYEASLGRETSTNYPLVNFLMATEADFFVGALGSTWCFLIDGMRNTGGKVMAGYMSVNKDRFW

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G28910 unknown protein Lus10008196
[exp]
0 1
AT4G12840 Protein of unknown function (D... Lus10036434
[exp]
1.0 0.8207
AT2G38760 ANN3, ANNAT3 annexin 3 (.1) Lus10039547
[exp]
14.7 0.6700
AT1G06550 ATP-dependent caseinolytic (Cl... Lus10020758
[exp]
18.8 0.8051
Lus10013622
[exp]
19.7 0.7168
AT3G14170 Plant protein of unknown funct... Lus10008137
[exp]
24.2 0.7389
AT5G51710 ATKEA5, KEA5 K+ efflux antiporter 5, ARABID... Lus10031687
[exp]
25.5 0.7189
AT5G02440 unknown protein Lus10016560
[exp]
33.5 0.6399
AT4G30080 ARF ARF16 auxin response factor 16 (.1) Lus10021467
[exp]
34.6 0.7174
AT1G08620 PKDM7D Transcription factor jumonji (... Lus10003548
[exp]
41.8 0.6413
AT1G63300 Myosin heavy chain-related pro... Lus10017237
[exp]
44.0 0.6995

Lus10008196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.