Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04380 216 / 1e-68 SDG31, SUVR4 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) AT5G43990 151 / 9e-43 SDG18, SUVR2 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) AT1G04050 144 / 7e-40 SDG13, SUVR1 SET DOMAIN PROTEIN 13, homolog of SU(var)3-9 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005476 [exp] 356 / 5e-123 AT3G04380 503 / 3e-176 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10012513 [exp] 168 / 2e-50 AT3G04380 419 / 2e-143 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022657 [exp] 160 / 6e-48 AT3G04380 412 / 2e-142 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Lus10022879 [exp] 157 / 1e-44 AT5G43990 455 / 2e-149 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10024946 [exp] 155 / 1e-43 AT5G43990 488 / 7e-163 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Lus10029470 [exp] 44 / 3e-05 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048100 [exp] 213 / 6e-66 AT3G04380 471 / 5e-161 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.009G138600 [exp] 183 / 9e-55 AT3G04380 427 / 2e-144 SET DOMAIN PROTEIN 31, SET-domain containing protein lysine methyltransferase family protein (.1.2) Potri.002G257400 [exp] 172 / 9e-50 AT5G43990 524 / 8e-176 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.014G192500 [exp] 171 / 2e-49 AT5G43990 531 / 3e-178 SET DOMAIN PROTEIN 18, SET-domain containing protein lysine methyltransferase family protein (.1.2.3.4.5) Potri.001G036800 [exp] 42 / 0.0001 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.003G188700 [exp] 42 / 0.0002 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05033 [flax] [poplar] Pre-SET Pre-SET motif
Representative CDS sequence Show only first row Show all	>Lus10008198 pacid=23173786 polypeptide=Lus10008198 locus=Lus10008198.g ID=Lus10008198.BGIv1.0 annot-version=v1.0 ATGTGTAGAAAACTGCTTCATTGGTTGGTTTTAGCAGATGAAACCAGGAACATAAATCTTCGAAGGAACTATCATCACTACATACCCGACATAACGAAAG GAGCTGAGAACGTCATGATTTTGTTAGTTGATGAATATGGCAGAGAGGAGGAGCTGCCGAAGTTCACCTACATACAGAACACCATCGTGCACCAAGACGC TAAGTTGCACATTTGCTTGGCGCGGATTTCCGACATGGACTGCTGCTTGAGTTGCGTGGGAGATTGTGTTGCACAACTGGTGCCTTGCGCATGTTCCCGT GAGACTGGTGGGGGATTCGCTTATACGAAACAAGGCCTTGTCAACGAAGAGTTTCTTGAAGCCTGTTTATCCATGGCTACCGATCCTGAAGAGCATCATA TGTTTTTTTGCCAAGATTGTCCCTTGGCCAGGGTTAAGCGCCAGAATGTGCATGCAAGATGTGATGGCCATTTGATCAGGAAGTTCATCAAAGAGTGTTG GGTCAAATGTGGATGTGAAATGAGCTGTGGAAATCGAGTTCTACAACGGGGTATCACTTGCAAATTACAGGTTAGAATTCTGTAG
AA sequence Show only first row Show all	>Lus10008198 pacid=23173786 polypeptide=Lus10008198 locus=Lus10008198.g ID=Lus10008198.BGIv1.0 annot-version=v1.0 MCRKLLHWLVLADETRNINLRRNYHHYIPDITKGAENVMILLVDEYGREEELPKFTYIQNTIVHQDAKLHICLARISDMDCCLSCVGDCVAQLVPCACSR ETGGGFAYTKQGLVNEEFLEACLSMATDPEEHHMFFCQDCPLARVKRQNVHARCDGHLIRKFIKECWVKCGCEMSCGNRVLQRGITCKLQVRIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Lus10008198 [exp]	0	1
					Lus10034814 [exp]	3.5	0.8933
					Lus10035508 [exp]	5.8	0.8557
					Lus10012269 [exp]	7.1	0.8557
AT5G04347			Plant self-incompatibility pro...		Lus10029375 [exp]	8.2	0.8557
AT5G48540			receptor-like protein kinase-r...		Lus10030777 [exp]	9.2	0.8557
AT5G52605			Defensin-like (DEFL) family pr...		Lus10031095 [exp]	10.1	0.8557
AT1G21000			PLATZ transcription factor fam...		Lus10005350 [exp]	10.9	0.8557
AT3G18040		ATMPK9	MAP kinase 9 (.1.2)		Lus10038956 [exp]	11.7	0.8557
AT5G56670			Ribosomal protein S30 family p...		Lus10019054 [exp]	12.4	0.8557
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10006147 [exp]	13.0	0.8524

Compare expression of checked genes

Lus10008198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.