Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55020 1048 / 0 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 925 / 0 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 612 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 605 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT3G45140 583 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 535 / 3e-177 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001465 [exp] 1474 / 0 AT1G55020 1162 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10015184 [exp] 1249 / 0 AT1G55020 1245 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10031505 [exp] 1238 / 0 AT1G55020 1237 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Lus10004915 [exp] 982 / 0 AT3G22400 1289 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10025857 [exp] 657 / 0 AT3G22400 809 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10013151 [exp] 630 / 0 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10015666 [exp] 629 / 0 AT1G17420 1381 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10008113 [exp] 627 / 0 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10006429 [exp] 600 / 0 AT1G67560 1034 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022000 [exp] 1066 / 0 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032700 [exp] 1066 / 0 AT1G55020 1307 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032400 [exp] 1064 / 0 AT1G55020 1308 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032600 [exp] 1053 / 0 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.013G022100 [exp] 1032 / 0 AT1G55020 1241 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.005G032800 [exp] 1027 / 0 AT1G55020 1240 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) Potri.008G151500 [exp] 1011 / 0 AT3G22400 1274 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G089500 [exp] 982 / 0 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 626 / 0 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 625 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10008202 pacid=23164944 polypeptide=Lus10008202 locus=Lus10008202.g ID=Lus10008202.BGIv1.0 annot-version=v1.0 ATGAGAAGAATCAAAGGAAGTGTGGTGCTGATGAAGAAGAATGTTTTGGAGCTCACTGACTTGAATGCTTCCCTTGTTGGTCGTCTCCACGAGCTCCTCG GCCATAGGGTTTCCCTGCAACTCATCAGCTCTGTTCTTGGAGATCCTCCGAATGGTAACAAAGGAAAAATTGGAAAGGCAGCATACCTGGAGAACTGGAT TCCCACAATTGCTCCCTTAACTGCTGGTCAAACATCCTACAACCACCACAGTGAGTTCTTCCTCAAGTTTCTCACCCTCGAAGATGTTCCCGGTAAAGGC AGGATGCACTTCGTCTGCAACTCGTGGATTTATCCTGCCAAACGATACGAGAAGAAATACCGTGTTTTCTTCACTAACAAGACATATCTACCACACGAGA CGCCATTGCCACTGGTTAAGTACAGAGAGGAAGAGTTGGTTACCTTGAGAGGAAATGGAGAAGGGGAGCTCCAAGAATGGGACAGGGTCTATGACTATGC TTGTTACAATGATTGGGGAGATCCCGATTGCAGTCCAGAGCATGCTCGACCGACTCTTGGAGGATCGACTGACTTCCCATATCCTCGCAGAGGAAGGACC GGAAGGCCACCGTCAAAATCAGATGCCAAGGCGGAGAGCAGGTTGCCACTTGTGAAGAGCCTAGAGATATATGTCCCCAGAGGTGAGAAATTTGGTCCCC TGAAGTTGTCTGATTCCATCGTTACTCGGCTGAAATCCATCATCCAATTAGTGAAGCCAGCACTTGAGGATCTTTTTTCTAAGAATCCAGGAGAGTTTGA TTCCTTTGAGGATGCTTTGAAGATCTATGATGGAGGACTTAAGCTCCTTGAAGATCCCGCACTTGTCTGCCTCTGGAAGAATGTCCCATTGGATATCATT AAGCGAATTTTCAACACTGATGGAGAGCCACTTTTAAAATATCCTCAGCCTGACGTGTTTTTGATGCCATTGGCATTGTTTGATGTTTCGGACTTCGGAG CAGAGAGTAAGACGGCTTGGAGGATGGATCAAGAATTTGCTAGAGAAATGCTCGCTGGACTTAACCCTCTTATCATTAGGCTTCTTCAGGAGTTCCCTCC AAGGAGCAAGCTGGATCGTAAAGTCTACGGCAATCAAGACAGTTCAATAAGTGAAGAGCACATAGTGAATCAACTAAATGGACTTACCGTAATTGAGGCA ATAAAAAACAAGAAGCTATTCATACTAGATCACCATGACACAGTTATGCCTTACCTGGGGAGGATTAATAACACAACTAAAACCAAAACCTACGCAACAA GGACAATCTTATTCCTCCAGAAGGGCGACATATTGAAGCCAGTAGCAATAGAGTTTAGCCTTCCACATCCTGATGGTGATCGGTATGGATCAGTTAGCAA AGTCTATATACGACCACCATCAACTGATCATCTAGTAGGCGGCCTGAAGAATTCCATTTGGCAACTGGCTAAAGCTTATGTAACCGTAACTGACTCGTGC TCTCATGAGCTCATCACCCACTGGTTGCACACTCATGCTGTGATCGAGCCGTTTGTAATTGCAACTAACCGACAGCTGAGTGTACTCCATACAATCTACA AGCTTCTCCACCCTCATCTCCGTGATACCATTAATATAAATGCACTTGCAAGACAAAGGCTTATCAATGGAGGCGGAGTAGTTGAGGCAACATTTTACCC TGCAAAGTACAGTATGGAAATGTCTTCTTTCCTGTACAAAAACTGGACCTTCACTGAACAAGCTCTCCCGGAGGATCTCAAGAAGAGGGGAATGGCAGTT TCTGATCCAAATTCCAAACACGGCCTCCGACTTGTGATTAAAGACTACCCATACGCTGTTGACGGGCTTGAGATCTGGTCAGCAATCAAAACCTGGGTTT CCGACTACACATCACTGTACTATCCGACGAACGAGGTCATCCAAAGCGACGTGGAGCTCCAATCGTGGTGGAAGGAGCTGGTAGAGGTCGGCCATGGAGA CAAAAAACACGAGCCCTGGTGGCCAAAGATGCATAACCGAAATGAGCTCATCGAAATGTGCACAACAGTGATCTGGATTGCGTCGGCGCTGCACGCCGCC ACAAATTATGAACAGTACGCTTACGCAGGCTACATGCCAAACCGGCCCACCACCAGCCGGCGGTTCATGCCGGAGGAAGGAAGCCCGGACCTCGAGGAGC TGAAAACAAATCCCGAGAGGGCTTTCTTCAGAACGATCAATGCCAAGCTTCAAACCCTCCTGGTAATCTCGCTGACTGAGCTCCTTTCGACGCATTCGCC GGAGGAAGTGTATTTAGGGCAGCGGGACACGTCAGAATGGACGGCTGATTTGGTAGCGGTGGCGGCGTTTGAGAAGTTTGGGAGGACGTTAGCAGAGGTG GAGGCTGGGATTATGGAGCGGAACAGTGAGGAGAAGTTGAAGAATAGGTATGGTCCGGTGAAGATTCCATACACCCTGTCATTTCCGAGTAGTGAGGCTG GCCGGACCGGCAAAGGAATCCCCAGTAGTATTACCATTTAA
AA sequence Show only first row Show all	>Lus10008202 pacid=23164944 polypeptide=Lus10008202 locus=Lus10008202.g ID=Lus10008202.BGIv1.0 annot-version=v1.0 MRRIKGSVVLMKKNVLELTDLNASLVGRLHELLGHRVSLQLISSVLGDPPNGNKGKIGKAAYLENWIPTIAPLTAGQTSYNHHSEFFLKFLTLEDVPGKG RMHFVCNSWIYPAKRYEKKYRVFFTNKTYLPHETPLPLVKYREEELVTLRGNGEGELQEWDRVYDYACYNDWGDPDCSPEHARPTLGGSTDFPYPRRGRT GRPPSKSDAKAESRLPLVKSLEIYVPRGEKFGPLKLSDSIVTRLKSIIQLVKPALEDLFSKNPGEFDSFEDALKIYDGGLKLLEDPALVCLWKNVPLDII KRIFNTDGEPLLKYPQPDVFLMPLALFDVSDFGAESKTAWRMDQEFAREMLAGLNPLIIRLLQEFPPRSKLDRKVYGNQDSSISEEHIVNQLNGLTVIEA IKNKKLFILDHHDTVMPYLGRINNTTKTKTYATRTILFLQKGDILKPVAIEFSLPHPDGDRYGSVSKVYIRPPSTDHLVGGLKNSIWQLAKAYVTVTDSC SHELITHWLHTHAVIEPFVIATNRQLSVLHTIYKLLHPHLRDTININALARQRLINGGGVVEATFYPAKYSMEMSSFLYKNWTFTEQALPEDLKKRGMAV SDPNSKHGLRLVIKDYPYAVDGLEIWSAIKTWVSDYTSLYYPTNEVIQSDVELQSWWKELVEVGHGDKKHEPWWPKMHNRNELIEMCTTVIWIASALHAA TNYEQYAYAGYMPNRPTTSRRFMPEEGSPDLEELKTNPERAFFRTINAKLQTLLVISLTELLSTHSPEEVYLGQRDTSEWTADLVAVAAFEKFGRTLAEV EAGIMERNSEEKLKNRYGPVKIPYTLSFPSSEAGRTGKGIPSSITI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10008202 [exp]	0	1
					Lus10024547 [exp]	1.4	0.8691
					Lus10029450 [exp]	2.0	0.8954
AT2G04410			RPM1-interacting protein 4 (RI...		Lus10016623 [exp]	5.5	0.8361
AT3G27210			unknown protein		Lus10035217 [exp]	6.2	0.8440
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10037686 [exp]	6.2	0.7995
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10030311 [exp]	6.3	0.8098
AT3G08610			unknown protein		Lus10010288 [exp]	12.7	0.8098
AT5G45550		MOB1-like	MOB1-like, Mob1/phocein family...		Lus10017172 [exp]	14.9	0.8277
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10019047 [exp]	19.0	0.7860
AT1G16760			Protein kinase protein with ad...		Lus10008609 [exp]	25.9	0.7703

Compare expression of checked genes

Lus10008202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.