Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02320 497 / 4e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02300 494 / 6e-171 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 437 / 8e-148 ATPME2 pectin methylesterase 2 (.1) AT2G45220 433 / 3e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 431 / 1e-145 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 431 / 4e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 427 / 3e-144 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 424 / 2e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 423 / 2e-142 ATPME3 pectin methylesterase 3 (.1) AT1G02810 422 / 3e-142 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038917 [exp] 444 / 2e-151 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 439 / 2e-150 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 444 / 4e-150 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 434 / 3e-147 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10039314 [exp] 432 / 3e-146 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10009110 [exp] 427 / 6e-145 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 420 / 2e-141 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10017375 [exp] 414 / 7e-141 AT3G43270 525 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003933 [exp] 418 / 2e-140 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202500 [exp] 595 / 0 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 462 / 2e-157 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 448 / 3e-152 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.010G109400 [exp] 446 / 3e-152 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 445 / 8e-152 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 443 / 2e-150 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.015G127700 [exp] 439 / 1e-149 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 439 / 2e-149 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G162400 [exp] 438 / 2e-148 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.014G067100 [exp] 434 / 1e-147 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10008203 pacid=23164908 polypeptide=Lus10008203 locus=Lus10008203.g ID=Lus10008203.BGIv1.0 annot-version=v1.0 ATGTACAACCTCACCAAATTACTAGCTCTTCTTCCAATCTCCCTCTTCTTACTAGCCACATTCCACTTCCTCCACCATCCCATCTCCAATCCAAACACCA AACCCACAAAACTCCCTCAGCTGCATTTCTACAAACACCTTGCGAGCATCAACTCTGCCTGCGATGGCACACTCTACCCCGACCTCTGCGTCTCCACTCT CCTCTCCTCCTTCCCAGCTGGCCACCTCACTTTCAGCTCCAAATCCAGATCCATCCCCAAACTAATCACCGCCACTCTCAACCGGACCATGTCCGAGGTC CGCGCCTCCTCCTCCAACTGCTCCCGCATCCAGCGGAACATCCATAGCCACCTCGACCGGGTAGCCCTCGCGCACTGTCTCGAGCTGCTCCACGNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTGAGGAAGGTTCCGGGAGTTGCGGAGGTTGAGAAATCGTCCGGATCGGATGCTGCTCGTCGTTTATGGTCTGGGTTT GGTGGTGATGTGGAGAACGATAGGTTCCCGACGTGGCTTTCGAGGAAGGACCGGAGATTGCTTCAGGCGCCGGTGAATGAGACCAAGTTTGATTTGATTG TGGCTAAGGACGGAACCGGGAACTTCAGTACCATCAGTGAGGCCGTGGCTGCGGCTCCCAATTCCAGCCATACCAGGTTTGTGATATACATAAAGAGCGG GGCGTACTTCGAGAACGTGGAGGTGGAAAAGAAGAAACTGAGACTGATGTTTATCGGAGATGGGATCGGCAAGACGGTGGTGAAGGCCAATCGGAGCGTC GTCGATGGATGGACCACTTTCCGTTCCGCAACTGTCGCGGTAGTTGGGAACGGATTCCTAGCCAAGGGGATAACAATCGAGAATTCAGCCGGACCGAGCA AGCACCAAGCTGTAGCATTACGTTCCGGCGCCGACTTCAGCGCCTTTTACCAGTGCAGCTTCGTAGGTTACCAGGATACTCTCTACGTTCACTCCCTCCG TCAATTCTACCGCGACTGCGACATCTATGGCACTGTTGACTTCATATTTGGAAACGCGGCTGTTGTCCTCCAAAACTGCAACCTCTATGCTCGGAAACCT AACCCAAATCAGAAGAATATCTACACTGCTCAGGGGCGGGAGGACCCGAACCAAAACACCGGCATTGTTCTCCACAACTGTAAGATAGCCGCCGCGGCTG ACCTAATCCCAGTCAAGGCCCAGTTCAAGACTTATTTGGGCCGGCCCTGGAAGACGTATTCGAGGACGGTCATTATGGGCTCGTACATAGATGACATTGT GGACCCTGCCGGGTGGCTGGAGTGGGACGGCTCATTTGCGCTCAGTACGTTGTACTATGGGGAGTATATGAATAGGGGACCCGGTTCGAACACCACTCGG AGGGTGACATGGCCCGGTTACCGAGTTATTAACAATTCGGTTGAGGCTAGTCAGTTTACGGTTGGGGTATTTATTCAGGGGAGCGAGTGGCTCAATACCA CTGGTATCCCTTTTACTTCGGGTTTGAGTTAG
AA sequence Show only first row Show all	>Lus10008203 pacid=23164908 polypeptide=Lus10008203 locus=Lus10008203.g ID=Lus10008203.BGIv1.0 annot-version=v1.0 MYNLTKLLALLPISLFLLATFHFLHHPISNPNTKPTKLPQLHFYKHLASINSACDGTLYPDLCVSTLLSSFPAGHLTFSSKSRSIPKLITATLNRTMSEV RASSSNCSRIQRNIHSHLDRVALAHCLELLHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKVPGVAEVEKSSGSDAARRLWSGF GGDVENDRFPTWLSRKDRRLLQAPVNETKFDLIVAKDGTGNFSTISEAVAAAPNSSHTRFVIYIKSGAYFENVEVEKKKLRLMFIGDGIGKTVVKANRSV VDGWTTFRSATVAVVGNGFLAKGITIENSAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYRDCDIYGTVDFIFGNAAVVLQNCNLYARKP NPNQKNIYTAQGREDPNQNTGIVLHNCKIAAAADLIPVKAQFKTYLGRPWKTYSRTVIMGSYIDDIVDPAGWLEWDGSFALSTLYYGEYMNRGPGSNTTR RVTWPGYRVINNSVEASQFTVGVFIQGSEWLNTTGIPFTSGLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	0	1
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	2.4	0.9624
					Lus10038634 [exp]	2.4	0.9487
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Lus10030900 [exp]	2.6	0.9409
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10030690 [exp]	4.2	0.9268
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10014147 [exp]	4.5	0.9448
AT4G23820			Pectin lyase-like superfamily ...		Lus10003890 [exp]	4.9	0.9449
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	6.0	0.9402
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10010949 [exp]	6.0	0.9453
AT2G19880			Nucleotide-diphospho-sugar tra...		Lus10012951 [exp]	6.2	0.9357
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10025829 [exp]	7.1	0.9290

Compare expression of checked genes

Lus10008203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.