Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02280 129 / 5e-36 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 123 / 6e-34 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 115 / 2e-31 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 106 / 4e-28 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G73370 79 / 3e-18 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 62 / 2e-12 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013417 [exp] 144 / 2e-41 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10010308 [exp] 139 / 2e-39 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10001468 [exp] 134 / 6e-38 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 115 / 3e-31 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 115 / 3e-31 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10041979 [exp] 79 / 3e-18 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 75 / 6e-17 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 75 / 7e-17 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 74 / 1e-16 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202300 [exp] 130 / 1e-36 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.006G136700 [exp] 117 / 6e-32 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 115 / 3e-31 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.015G029100 [exp] 82 / 2e-19 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 78 / 4e-18 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 76 / 4e-17 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.004G081300 [exp] 75 / 6e-17 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10008204 pacid=23164920 polypeptide=Lus10008204 locus=Lus10008204.g ID=Lus10008204.BGIv1.0 annot-version=v1.0 ATGAATCTTCGAATAATCTTGCTGTTCAGTTTGAAATTTGAAATTTGTGGCGCGCGGTTGACACAGGAAGCCATAGTACTACCTCCATTCATAGCAATTG CAGTTCGTCCAAGGCCTGGTGTTTGGGAGGATGTGCGCGTTAATGTTAATGAACTCAGCGTGGATCAATTGACTGTCTCCGAGTACCTTAAGTTCAAAGA AGAGCTTGTGGACGGGCAGGCTAGTGATCCGTATGTTCTGGAGCTGGATATGGAGCCATTCAACGCTAGCTTCCCTCGGCCCAGTCGTTCAACGCCATTC AACGCCATTCAACGCTAG
AA sequence Show only first row Show all	>Lus10008204 pacid=23164920 polypeptide=Lus10008204 locus=Lus10008204.g ID=Lus10008204.BGIv1.0 annot-version=v1.0 MNLRIILLFSLKFEICGARLTQEAIVLPPFIAIAVRPRPGVWEDVRVNVNELSVDQLTVSEYLKFKEELVDGQASDPYVLELDMEPFNASFPRPSRSTPF NAIQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008204 [exp]	0	1
AT1G46912			F-box associated ubiquitinatio...		Lus10003349 [exp]	2.0	0.7563
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Lus10031442 [exp]	9.3	0.6491
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	9.8	0.7301
AT4G17020			transcription factor-related (...		Lus10041753 [exp]	12.0	0.6852
					Lus10039535 [exp]	13.3	0.6671
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	15.1	0.7999
AT5G08350			GRAM domain-containing protein...		Lus10013445 [exp]	15.2	0.7128
AT1G30890			Integral membrane HRF1 family ...		Lus10007418 [exp]	17.7	0.6783
AT1G78690			Phospholipid/glycerol acyltran...		Lus10003105 [exp]	19.0	0.5921
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10031582 [exp]	21.6	0.6404

Compare expression of checked genes

Lus10008204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.