Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02280 466 / 3e-159 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 452 / 6e-154 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 410 / 2e-137 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 398 / 7e-133 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT1G73370 345 / 2e-111 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 338 / 2e-109 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001468 [exp] 559 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10010308 [exp] 518 / 4e-180 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 443 / 6e-151 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 411 / 6e-138 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 390 / 4e-130 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10007372 [exp] 343 / 3e-111 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 343 / 3e-111 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 304 / 2e-95 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 263 / 1e-79 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202300 [exp] 496 / 5e-171 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.006G136700 [exp] 419 / 3e-141 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 416 / 6e-140 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.004G081300 [exp] 361 / 3e-118 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.015G029100 [exp] 357 / 1e-115 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 355 / 5e-115 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 353 / 6e-115 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10008205 pacid=23164902 polypeptide=Lus10008205 locus=Lus10008205.g ID=Lus10008205.BGIv1.0 annot-version=v1.0 ATGTTGAATGAAAGGATACAAAGTGTATCAAGACTTCAATCTGTGCTTGCTAAGGTAGAAGAAAATATCTCCAAGCTCCCACCTGACACGCCTTATTCTG AGTTTGAGTACGCTATACAAGGAATGGGGTTCGAGCGAGGGTGGGTCGATACTGCAGAGCGGACTGTGGAGACTATGCATCTTCTGTTGGACATCTTGCA GGCTCCTGATTCAACTTTAGAAACATTCCTGGGGAGAGTACCTATGGTATTCAACGTCGTTATCTTGTCTCCACATGGATACTTTGGACAGGCAAATGTT TTAGACATGCCTGACACTGGTGGTCAGGTAAACACAGTTGGCCAGACATCGATGTCACGAGCTAACGGCTTCATATCCTCTGGCACTGACAATTGTCATA TTTTGGATCAAGTACGTGCTTTGGAGAGTGAAATGCTTCTTAGAATAAAGAAGCAAGGATTGGATTTCAAGCCTAGGATTCTGATTGTGACCAGGTTGAT ACCTGATGGAAAGGGTACTACATGCAATCAGTGTATGGAAAGAATCAGTGGAACGGAGTACACTCATTTTCTGCGAGTACCCTTTCGATCAGAGAATGGA ATTCTTCGAAAGTGGATCTCCAGATTTGATGTCTGGCCATACTTGGAGACTTTTGCTGAGGATGTTGCCAGTAAAATTGTGGCCGAGTTACAGGCAATTC CAGATTTTATAATTGGTAACTATAGTGATGGGAACCTTGTAGCTTCTTTGTTGACTTGCAAAATGGGTGTTACACAGGAAACATACTGTGGGACAGTAGA AAGCCACACAGCCTTCACCCTTCCAGGACAGTATAGAGTTGTTCACGGTATTGATGTTTTCGATCCAAAGTTCAATATTGTATCACCTGGAGCTGACATG TCAATCTACTTCCCTTACTTCGAGAAGCAAAAAAGACTTACAGCTCTGCATGCACCAATAGAGAAGATGTTGTTCGATCCAGACCAAACTGATGACTGGA TTGGTAATATAGATGATCGATCCAAGCCCATCCTCTTTTCGATGGCAACCGTGTGA
AA sequence Show only first row Show all	>Lus10008205 pacid=23164902 polypeptide=Lus10008205 locus=Lus10008205.g ID=Lus10008205.BGIv1.0 annot-version=v1.0 MLNERIQSVSRLQSVLAKVEENISKLPPDTPYSEFEYAIQGMGFERGWVDTAERTVETMHLLLDILQAPDSTLETFLGRVPMVFNVVILSPHGYFGQANV LDMPDTGGQVNTVGQTSMSRANGFISSGTDNCHILDQVRALESEMLLRIKKQGLDFKPRILIVTRLIPDGKGTTCNQCMERISGTEYTHFLRVPFRSENG ILRKWISRFDVWPYLETFAEDVASKIVAELQAIPDFIIGNYSDGNLVASLLTCKMGVTQETYCGTVESHTAFTLPGQYRVVHGIDVFDPKFNIVSPGADM SIYFPYFEKQKRLTALHAPIEKMLFDPDQTDDWIGNIDDRSKPILFSMATV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	0	1
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008206 [exp]	4.9	0.9035
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008204 [exp]	15.1	0.7999
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Lus10039235 [exp]	19.4	0.8810
AT1G80570			RNI-like superfamily protein (...		Lus10012721 [exp]	23.2	0.8393
AT5G55260		EP128, PPX-2, P...	PROTEIN PHOSPHATASE X -2, prot...		Lus10013095 [exp]	31.9	0.8396
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10004264 [exp]	36.2	0.8576
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Lus10005387 [exp]	52.5	0.8224
AT5G58630			unknown protein		Lus10040661 [exp]	65.7	0.8457
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10033243 [exp]	195.1	0.8005
AT3G54570			Plant calmodulin-binding prote...		Lus10024175 [exp]	214.5	0.8055

Compare expression of checked genes

Lus10008205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.