Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02280 323 / 2e-106 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 304 / 2e-99 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT5G20830 278 / 2e-89 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 273 / 1e-87 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT1G73370 234 / 2e-72 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 229 / 5e-71 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G10120 78 / 7e-17 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 76 / 3e-16 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G20280 66 / 7e-13 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT1G04920 64 / 3e-12 ATSPS3F sucrose phosphate synthase 3F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013417 [exp] 348 / 4e-117 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10010308 [exp] 349 / 5e-117 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10001468 [exp] 347 / 7e-115 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 264 / 5e-84 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 258 / 7e-82 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10041979 [exp] 228 / 6e-70 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 225 / 1e-68 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 219 / 4e-67 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 219 / 7e-67 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202300 [exp] 323 / 8e-107 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.006G136700 [exp] 273 / 9e-88 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 264 / 6e-84 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.017G139100 [exp] 240 / 8e-75 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.015G029100 [exp] 239 / 3e-74 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 237 / 1e-73 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 236 / 5e-73 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.013G095500 [exp] 77 / 2e-16 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.018G025100 [exp] 73 / 3e-15 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 71 / 2e-14 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10008206 pacid=23164912 polypeptide=Lus10008206 locus=Lus10008206.g ID=Lus10008206.BGIv1.0 annot-version=v1.0 ATGGAAGAAATCGAAAAGATGCATAATCTTATGACGACTTATGACTTGAGTGGACAATTCCGTTGGATAACAGCTCAAACAAATAGAGCTATGAACGGTG AGCTCTACCGCTACATAGCAGACACAAGAGGAGCTTTCGTTCAGCCTGCTTTTTTCGAGGCATTTGGGCTTACAGTTGTGGATGCAATGCCTTGTGGCCT TCCGACTTTCGCCACTCTCCATGGTGGCCCTGCAGAGATTATCGAGCATGGCATCTCTGGGTTCCATATCGATCCGTATCACCCTGATCAGACCGCTTCA CAAATGGCAGATTTCTTCCAGCGATGCAAGGAAGATCCTAGCTACTGGAATAAAATCTCCGGAGGACTCAAACGCATTTACGAGAGGTACACATGGAAGA TCTATTCTGAACGGCTGATGACCTTGGCTGGAGTATACAGTTTCTTGAAACACGTATCTAAACTCGAACGACAGGAGCCTCGAAGATACCTGGAGATGTT CTACATTCTCAAATTTCGTGATTTGACGAACACTGTTCCTTTGGCCATTGATGACCATGTCTAA
AA sequence Show only first row Show all	>Lus10008206 pacid=23164912 polypeptide=Lus10008206 locus=Lus10008206.g ID=Lus10008206.BGIv1.0 annot-version=v1.0 MEEIEKMHNLMTTYDLSGQFRWITAQTNRAMNGELYRYIADTRGAFVQPAFFEAFGLTVVDAMPCGLPTFATLHGGPAEIIEHGISGFHIDPYHPDQTAS QMADFFQRCKEDPSYWNKISGGLKRIYERYTWKIYSERLMTLAGVYSFLKHVSKLERQEPRRYLEMFYILKFRDLTNTVPLAIDDHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008206 [exp]	0	1
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	4.9	0.9035
AT4G03965			RING/U-box superfamily protein...		Lus10015152 [exp]	11.1	0.9275
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	15.3	0.9196
AT1G21000			PLATZ transcription factor fam...		Lus10002700 [exp]	21.4	0.9253
AT5G04760	MYB		Duplicated homeodomain-like su...		Lus10041088 [exp]	23.0	0.9131
					Lus10041676 [exp]	23.7	0.9198
AT5G09640		SNG2, SCPL19	SINAPOYLGLUCOSE ACCUMULATOR 2,...		Lus10007731 [exp]	25.6	0.9191
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10024030 [exp]	26.4	0.9205
AT1G18270			ketose-bisphosphate aldolase c...		Lus10008754 [exp]	31.1	0.9135
AT1G57610			Protein of unknown function (D...		Lus10034435 [exp]	33.4	0.9111

Compare expression of checked genes

Lus10008206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.