Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02290 808 / 0 ATGH9B13 glycosyl hydrolase 9B13 (.1) AT1G02800 771 / 0 ATCEL2 cellulase 2 (.1) AT1G70710 619 / 0 CEL1 ,AtGH9B1 CELLULASE 1, glycosyl hydrolase 9B1 (.1) AT1G23210 601 / 0 ATGH9B6 glycosyl hydrolase 9B6 (.1) AT1G22880 557 / 0 ATCEL5 ,ATGH9B4 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, ARABIDOPSIS THALIANA CELLULASE 5, cellulase 5 (.1.2) AT4G39010 553 / 0 ATGH9B18 glycosyl hydrolase 9B18 (.1) AT1G71380 553 / 0 ATCEL3 ,ATGH9B3 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) AT4G39000 508 / 1e-177 ATGH9B17 glycosyl hydrolase 9B17 (.1) AT1G64390 496 / 4e-171 ATGH9C2 glycosyl hydrolase 9C2 (.1) AT4G23560 488 / 5e-170 ATGH9B15 glycosyl hydrolase 9B15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038223 [exp] 724 / 0 AT4G02290 706 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10013418 [exp] 687 / 0 AT4G02290 625 / 0.0 glycosyl hydrolase 9B13 (.1) Lus10025880 [exp] 661 / 0 AT1G71380 646 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Lus10029071 [exp] 613 / 0 AT1G70710 827 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10001666 [exp] 573 / 0 AT1G02800 600 / 0.0 cellulase 2 (.1) Lus10018077 [exp] 557 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10042071 [exp] 548 / 0 AT4G39010 717 / 0.0 glycosyl hydrolase 9B18 (.1) Lus10034199 [exp] 540 / 0 AT1G70710 758 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Lus10010307 [exp] 539 / 0 AT4G02290 493 / 2e-171 glycosyl hydrolase 9B13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202400 [exp] 856 / 0 AT4G02290 818 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.014G126900 [exp] 840 / 0 AT4G02290 799 / 0.0 glycosyl hydrolase 9B13 (.1) Potri.001G083200 [exp] 630 / 0 AT1G02800 593 / 0.0 cellulase 2 (.1) Potri.010G109200 [exp] 612 / 0 AT1G70710 829 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.008G132700 [exp] 607 / 0 AT1G70710 808 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1) Potri.019G069300 [exp] 579 / 0 AT1G71380 762 / 0.0 ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B3, cellulase 3 (.1) Potri.004G162200 [exp] 577 / 0 AT4G39010 703 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.009G123900 [exp] 566 / 0 AT4G39010 722 / 0.0 glycosyl hydrolase 9B18 (.1) Potri.015G127900 [exp] 541 / 0 AT1G23210 568 / 0.0 glycosyl hydrolase 9B6 (.1) Potri.015G128000 [exp] 536 / 0 AT1G70710 569 / 0.0 CELLULASE 1, glycosyl hydrolase 9B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00759 [flax] [poplar] Glyco_hydro_9 Glycosyl hydrolase family 9
Representative CDS sequence Show only first row Show all	>Lus10008208 pacid=23164905 polypeptide=Lus10008208 locus=Lus10008208.g ID=Lus10008208.BGIv1.0 annot-version=v1.0 ATGTCTCTCCCTCGTTTCACTCTCCTCCTGCTTTTCCTGCTCTCGAGCTTAGCACTTTCTCTCCTTCCCAACTCTAATGGAGCAGCATCACTCCATCACC GCCACCACACCCCACGTTCCGCCCGTCACAACTACAGAGATGCACTAACCAAATCCATTCTCTTCTTCGAAGGCCAGAGGTCTGGGAAGCTCCCTCCCAA CCAGAGGATGTCTTGGAGGAAAGACTCTGCTCTCTCCGACGGCTCTGCCATGAATGTGGATTTGGTAGGAGGGTATTATGATGCAGGGGACAATGTGAAG TTTGGTTTCCCAATGGCATTCACAACCACAATGCTGTCCTGGAGTGTGATTGAGTTTGGTGGGTTGATGAAAGGTGAGCTTTTGAATGCAAAGGAAGCTA TTCGTTGGGGGACTGATTATCTCCTCAAAGCCACTGCACATCCCAACACCATCTATGTCCAGGTTGGTGATGCAACAAAGGACCATGCTTGTTGGGAGAG ACCAGAAGACATGGACACTCCTAGAACTGTGTTGAAGATAGACCAGAACTCACCTGGCTCCGATGTTGCTGGTGAAACCGCTGCTGCTTTAGCTGCTGCT TCTTTGGTTTTCAGGAGATGTGACCCTTCTTACTCCAAGCTCCTCCTGAAAAGGGCCATCAAAGTGTTCCAATTTGCTGATAAGTACAGAGGACCATACA GCAATGGGTTGAAAAGCTTTGTCTGCCCGTTCTACTGCTCATACTCTGGATACCAGGATGAGCTGCTGTGGGGAGCTGCATGGCTGCACAGGGCAACTAA GAACCAAATGTACCTAAACTACATCAAAGTGAACGGCCAGATACTGGGAGCTGCTGAGTTTGACAATACCTTTGGTTGGGACAATAAGCACGTCGGAGCC AGGATTCTTCTATCTAAAGCATTCCTTATTCAGAGAGTTCAGTCGCTCCATGACTACAAAGGACACGCTGATAATTTCATCTGCTCACTCATCCCTGGCG CCCCTTTCTCTTCCACCCAATACACTCCAGGTGGGCTTCTGTTCAAAATGAGTGACAGCAATATGCAGTATGTAACTTCAACTTCCTTCCTCCTCTTGGC ATACGCCAAGTATTTAACCTCTGCTCGCACTTTCGTTAACTGCGGCGGAACCGTGGTTACTCCTAATAGGCTCCGATCTATTGCCAAGAAGCAGGTGGAC TACCTGCTGGGAGACAACCCGATGAGTATGTCGTATATGGTGGGATACGGAGTTAGGTACCCACAGAGGGTCCACCACAGGGGGTCGTCACTGCCGTCGG TGGCGGCGCATCCGGCGAAGATCCAGTGCTCCGACGGATTCAACATGATGAACTCTGGATCTCCTAACCCCAACGTCCTGGTGGGGGCAGTGGTGGGAGG GCCGGACAGCCACGACCAGTTCCCGGACCAACGGTCGGATTACGAGCAGTCGGAGCCGGCGACGTACACGAACGCGCCGCTGGTCGGGTCGCTGGCTTAT CTGGCTCACTCCTTTGGCCAGCTCTAA
AA sequence Show only first row Show all	>Lus10008208 pacid=23164905 polypeptide=Lus10008208 locus=Lus10008208.g ID=Lus10008208.BGIv1.0 annot-version=v1.0 MSLPRFTLLLLFLLSSLALSLLPNSNGAASLHHRHHTPRSARHNYRDALTKSILFFEGQRSGKLPPNQRMSWRKDSALSDGSAMNVDLVGGYYDAGDNVK FGFPMAFTTTMLSWSVIEFGGLMKGELLNAKEAIRWGTDYLLKATAHPNTIYVQVGDATKDHACWERPEDMDTPRTVLKIDQNSPGSDVAGETAAALAAA SLVFRRCDPSYSKLLLKRAIKVFQFADKYRGPYSNGLKSFVCPFYCSYSGYQDELLWGAAWLHRATKNQMYLNYIKVNGQILGAAEFDNTFGWDNKHVGA RILLSKAFLIQRVQSLHDYKGHADNFICSLIPGAPFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLAYAKYLTSARTFVNCGGTVVTPNRLRSIAKKQVD YLLGDNPMSMSYMVGYGVRYPQRVHHRGSSLPSVAAHPAKIQCSDGFNMMNSGSPNPNVLVGAVVGGPDSHDQFPDQRSDYEQSEPATYTNAPLVGSLAY LAHSFGQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10008208 [exp]	0	1
AT3G57440			unknown protein		Lus10031072 [exp]	2.0	0.9516
AT2G28610	HD	PRS1, PRS, WOX3	WUSCHEL RELATED HOMEOBOX 3, PR...		Lus10023332 [exp]	2.4	0.9477
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Lus10018830 [exp]	2.8	0.9439
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10042765 [exp]	4.5	0.8915
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10011349 [exp]	4.9	0.9169
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10025321 [exp]	5.3	0.9157
AT4G11720		HAP2, GCS1	GENERATIVE CELL-SPECIFIC 1, ha...		Lus10029584 [exp]	17.1	0.8846
AT4G00360		ATT1, CYP86A2	"cytochrome P450, family 86, s...		Lus10018831 [exp]	17.7	0.8806
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Lus10005279 [exp]	18.4	0.8906
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	22.4	0.9464

Compare expression of checked genes

Lus10008208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.