Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02260 566 / 0 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003600 [exp] 737 / 0 AT4G02260 508 / 8e-174 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G126700 [exp] 626 / 0 AT4G02260 1305 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G432960 [exp] 82 / 2e-19 AT4G02260 84 / 9e-21 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G435200 [exp] 78 / 5e-18 AT4G02260 78 / 1e-18 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G434400 [exp] 76 / 6e-17 AT4G02260 77 / 3e-18 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02824 [flax] [poplar] TGS TGS domain
Representative CDS sequence Show only first row Show all	>Lus10008210 pacid=23164941 polypeptide=Lus10008210 locus=Lus10008210.g ID=Lus10008210.BGIv1.0 annot-version=v1.0 ATGCGGCAGATAAGGACGGAAGAGATGAATCTTATTGCCGAGAGAGGCATTGCTGCTCATTACAGCGGGAGGGGGAATATTACTGGGTTAATTGGACATG CAAAGCCTGGTACCAGAAGTTCAAGAGGAAAAACTATCTGTCTTAACAATGCAAACATTGCACGCAGGGTTGGCTGGCTCAACGCAATTAGAGAGTGGCA AGAAGAGTTTGTTGGCAATATGAGCTCAAGAGAGTTTGTGGATATAATCACCAGAGACTTGTTAGGCAGTCGTATCTTTGTATTCACGCCCAGGGGAGAG ATTAAAAACTTGCCCAAAGGGGCTACTGTTATTGATTATGCTTATATGATACACACTGAAGTTGGCAACAAGATGGTGGCTGCAAAGGTCAATGGTAATC CTGTTTCTCCAACACACGTTCTTGCCAATGCAGAAGTTGTGGAGATAATTACATATGATGCACTCTCTAACAAAACAGCTTTTCAGAGGCATAAACAATG GTTGCAACATGCAAGGACACGCAGTGCCAGACACAAAATCATGAAATTCTTGCGGGAGCAAGCTGCTCTATCAGCTAAAGAAATAACGGCAGATAGTGTG AATTACTTTCTTGCCAATTCAGAGGAGAAAAGCGAGGTAGATGATCTCTCCAAAAACAAGAAGCCAAGTAGGCCTCTCTGGGAGAGGATTTTTTCAAAAG TTGTTGACAAGTCAACTCATAGGCAAAATTCTGGTGGCTCATCCATTACTAACGGAAGTGTTTGGGCTCCAAAGGTCAATGGAAAACATAATAAGCATAT ACAACATGTCAGTTTACCAGCAGCTGACAATTGGCAGGCTAGTGTTTTAGCAGCCAATATTCCGATGTACAAGGAAGTTTTGCCTGGACTAGAAAATTGG AAAGCAAGCAAGATTGCTTCATGGCACGATCTTGAAGGGCACTCCATTCAATGGCTTTGTGTGGTCTGCATAGATCGGAAAGGTATGATGGCTGAAGTTA CATCAGCACTTGCAGCTGTGGATATCAGTATAGGTTCCTGTGTGGCTGATATTGATAGAGGAAGGGGAATGGCCGTTTTATTGTTTCATATAGAAGCGGA ACTTGAGAATTTGGTCAATTCTTGCTCAAGTATAGATGTTATTCTAGGCGTTTTGGGGTGGTCTACTGGTTGCAGCTGGCCAATCTCGACGGAAAGTCAT CGATATCTTGAATGCTAA
AA sequence Show only first row Show all	>Lus10008210 pacid=23164941 polypeptide=Lus10008210 locus=Lus10008210.g ID=Lus10008210.BGIv1.0 annot-version=v1.0 MRQIRTEEMNLIAERGIAAHYSGRGNITGLIGHAKPGTRSSRGKTICLNNANIARRVGWLNAIREWQEEFVGNMSSREFVDIITRDLLGSRIFVFTPRGE IKNLPKGATVIDYAYMIHTEVGNKMVAAKVNGNPVSPTHVLANAEVVEIITYDALSNKTAFQRHKQWLQHARTRSARHKIMKFLREQAALSAKEITADSV NYFLANSEEKSEVDDLSKNKKPSRPLWERIFSKVVDKSTHRQNSGGSSITNGSVWAPKVNGKHNKHIQHVSLPAADNWQASVLAANIPMYKEVLPGLENW KASKIASWHDLEGHSIQWLCVVCIDRKGMMAEVTSALAAVDISIGSCVADIDRGRGMAVLLFHIEAELENLVNSCSSIDVILGVLGWSTGCSWPISTESH RYLEC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008210 [exp]	0	1
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003600 [exp]	1.0	0.9212
AT5G56850			unknown protein		Lus10008560 [exp]	5.7	0.9102
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10029841 [exp]	7.7	0.8948
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10019004 [exp]	10.1	0.8091
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	11.3	0.8894
AT5G08650			Small GTP-binding protein (.1)		Lus10035968 [exp]	14.5	0.8770
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	15.1	0.8850
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10037766 [exp]	17.0	0.8678
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10032607 [exp]	21.5	0.8757
AT5G09820			Plastid-lipid associated prote...		Lus10020860 [exp]	23.4	0.8735

Compare expression of checked genes

Lus10008210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.