Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02270 125 / 3e-35 RHS13 root hair specific 13 (.1) AT2G47540 120 / 1e-33 Pollen Ole e 1 allergen and extensin family protein (.1) AT2G47530 89 / 2e-21 Pollen Ole e 1 allergen and extensin family protein (.1) AT3G62680 85 / 9e-19 ATPRP3, PRP3 ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 3, proline-rich protein 3 (.1) AT1G54970 83 / 4e-18 RHS7, ATPRP1 ROOT HAIR SPECIFIC 7, proline-rich protein 1 (.1) AT2G33790 40 / 0.0006 ATAGP30 arabinogalactan protein 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013419 [exp] 167 / 6e-51 AT4G02270 118 / 3e-33 root hair specific 13 (.1) Lus10005539 [exp] 134 / 6e-38 AT4G02270 103 / 1e-27 root hair specific 13 (.1) Lus10041926 [exp] 131 / 7e-37 AT4G02270 100 / 5e-26 root hair specific 13 (.1) Lus10010306 [exp] 43 / 3e-05 ND 38 / 9e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201800 [exp] 146 / 4e-43 AT4G02270 118 / 1e-33 root hair specific 13 (.1) Potri.017G145800 [exp] 141 / 2e-40 AT4G02270 118 / 5e-33 root hair specific 13 (.1) Potri.014G126500 [exp] 140 / 5e-39 AT2G47540 113 / 6e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126300 [exp] 139 / 1e-38 AT2G47540 114 / 1e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126200 [exp] 137 / 1e-37 AT2G47540 114 / 3e-30 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.014G126250 [exp] 136 / 3e-37 AT2G47540 112 / 2e-29 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.002G201900 [exp] 127 / 3e-36 AT2G47540 160 / 1e-50 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10008213 pacid=23164901 polypeptide=Lus10008213 locus=Lus10008213.g ID=Lus10008213.BGIv1.0 annot-version=v1.0 ATGGCTGCCATCCACTCCACTCTTGCAACGTATGTCCTCCTCTTGTCCTTGGCACTCGCCGCTGCTGCCACCTCCGGCGACTACTACCCCGTCGGCGCAG AAGCACCGAAACCTCAACCAACTTTGAAGCCTGCAGAGCCTTACGGTAGCACCTCCAACCCCAAGCCAGTTGTTACCAAACCACAAGAATCGAAGAATGA AACCCCCGACAAGAACAAGAGTAGTTACACTGATAGTTCTGCCAAACCAACGGAGCCTAATACCCACCAAAATGCTGAAAAGCCCAAATTGGAGCCCATC AAGGCGGAAACGACTGGGTACGGCCCAAAGCCCGATTACGATCTTACAGTCCCTAAGCTGGAGAAACCAGAGATGAACATCCCAAAGGCAGAAGATAGAA TCCATAAAAAACTGGAAGACGCATTCCCTTCTGCTGTGGAAGGCACTGTCATCTGCAAATCTGGCTCTAAATACCTCCCCGTTCAAGGAGCCGTGGTGAG AATTACATGCTGGGGAGTTGACGAGCAAGGCTACGACATTAACACATTATCATGCCAGAGTGGACCCACAGATGCTAAGGGCTACTTCTTCAAAACTCTA CGTCCTTCTTCTACCAACGACCACAACAACAACAACCATAATAATAATGTCTGGGGAAATTGCAAGGCTTTCTTGGAGCAATCGCCATTGGAGAACTGCA GCGTCCCGAGCGATGTGAACAAAGGCATTTCTGGTTCTCTGCTCTCCACTTACCGCCTTCTCCATGACAAGAGCCTCAAGTTGTACTCACTCGGTCCATT TTTCTACACTTCCGACGTCCCTAAACCTTCATCAGATGCTGACGGATACTGA
AA sequence Show only first row Show all	>Lus10008213 pacid=23164901 polypeptide=Lus10008213 locus=Lus10008213.g ID=Lus10008213.BGIv1.0 annot-version=v1.0 MAAIHSTLATYVLLLSLALAAAATSGDYYPVGAEAPKPQPTLKPAEPYGSTSNPKPVVTKPQESKNETPDKNKSSYTDSSAKPTEPNTHQNAEKPKLEPI KAETTGYGPKPDYDLTVPKLEKPEMNIPKAEDRIHKKLEDAFPSAVEGTVICKSGSKYLPVQGAVVRITCWGVDEQGYDINTLSCQSGPTDAKGYFFKTL RPSSTNDHNNNNHNNNVWGNCKAFLEQSPLENCSVPSDVNKGISGSLLSTYRLLHDKSLKLYSLGPFFYTSDVPKPSSDADGY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47540			Pollen Ole e 1 allergen and ex...		Lus10008213 [exp]	0	1
AT4G05030			Copper transport protein famil...		Lus10025179 [exp]	1.7	0.8492
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10014137 [exp]	5.7	0.8167
AT1G30870			Peroxidase superfamily protein...		Lus10001228 [exp]	8.1	0.7879
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	11.2	0.7061
AT1G63450		RHS8	root hair specific 8 (.1)		Lus10000604 [exp]	15.6	0.7307
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	17.6	0.7237
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	18.6	0.6995
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	19.1	0.7166
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10013419 [exp]	22.2	0.7207
AT1G18530			EF hand calcium-binding protei...		Lus10027243 [exp]	29.4	0.6951

Compare expression of checked genes

Lus10008213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.