Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51130 256 / 6e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003604 [exp] 434 / 2e-153 AT5G51130 332 / 3e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084700 [exp] 283 / 4e-94 AT5G51130 341 / 4e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF06859 [flax] [poplar] Bin3 Bicoid-interacting protein 3 (Bin3) CL0063 [flax] [poplar] NADP_Rossmann PF02390 [flax] [poplar] Methyltransf_4 Putative methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10008215 pacid=23164924 polypeptide=Lus10008215 locus=Lus10008215.g ID=Lus10008215.BGIv1.0 annot-version=v1.0 ATGGCAGAAGGGAAGGAAAAGAGAGATGAAAATGTCGGTGAGAAGAAGCGAAAAAGGGACGAGAATAAACATAAGAAGGATCATGAAAGAAAAGATGATG AAAACAATGAATCTCAGACGGAGCAAAGTCAGAAGCAGAATGGTAAACAGAAACCACAACAGAATCAAGTTTCCGGAGGCAGCAACAACAAGAAGAAGAA ACAAAAACAAGTCTTCCCGTTTGGAAATTACAGAAACTACTATGGATACCGTATTGGCGAAGGATTGGATGAAGATCCAAGGCTTAAGGTCTTGAAAAAG GAGTGGTTTGAAGGGAAAGACTGTCTCGACATTGGCTGCAATAGCGGCCTCATGACCATTCATATTGCTAAAAAGTTCAACTGCCGGAGCATCCTTGGCA TAGACATAGATCCTGATCGTGTTTCTGATGCCTGTTGGCACTTGAGAAAATTTTCAAGAGAACATTCTGGGAGTAGTAGTACCAATGTTTCAAAGGAGCA AATCAGAGATAAATTAAATGCTTCTAAGCAAAGTACACAATCACATCTAGGAGAAGACAAGGAGATGGAAAATGGTGCATCAATTTCCAAGGGGAATAAT TTATTTGACGCTGTTTCCTTCCGACAAGAAAATTTCGTCGACAGCCGGCACTCGCACAAAAAGCCATATGATGTTATTCTATGCTTGAGTGTGGCAAAGT GGATTCACTTGAACTGGGGAGATGATGGACTGATTAAACTATTCTCTGAAGTGTGGAAACATCTTCTTCCGGGTGTTTACGAGAAATTGCTTGCTGTGCT CAGGTGTCTCTGGTTGTATAAACTTGCTGATGGTATTGAGTTTTGCCAACTTCTGCAGATTGCAGCAGAGAATTACAGAAAAATCGTGTTCTACCCGAAA TATTTTCAAGAAATTCTACTAGATAAGATCGGTTTCAGATCTGTGGAGGACATCACATCCGAGTTGAGAGGGAGTAAAGCTGGGTTCAATCGGCCGATTT TCGCATTCCACAAATGA
AA sequence Show only first row Show all	>Lus10008215 pacid=23164924 polypeptide=Lus10008215 locus=Lus10008215.g ID=Lus10008215.BGIv1.0 annot-version=v1.0 MAEGKEKRDENVGEKKRKRDENKHKKDHERKDDENNESQTEQSQKQNGKQKPQQNQVSGGSNNKKKKQKQVFPFGNYRNYYGYRIGEGLDEDPRLKVLKK EWFEGKDCLDIGCNSGLMTIHIAKKFNCRSILGIDIDPDRVSDACWHLRKFSREHSGSSSTNVSKEQIRDKLNASKQSTQSHLGEDKEMENGASISKGNN LFDAVSFRQENFVDSRHSHKKPYDVILCLSVAKWIHLNWGDDGLIKLFSEVWKHLLPGVYEKLLAVLRCLWLYKLADGIEFCQLLQIAAENYRKIVFYPK YFQEILLDKIGFRSVEDITSELRGSKAGFNRPIFAFHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10008215 [exp]	0	1
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	3.5	0.8527
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	4.9	0.9027
AT3G12380		ATARP5	actin-related protein 5 (.1.2)		Lus10023400 [exp]	8.8	0.8443
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	11.0	0.8629
AT5G51130			S-adenosyl-L-methionine-depend...		Lus10003604 [exp]	12.3	0.8265
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034383 [exp]	16.7	0.8382
AT5G17930			MIF4G domain-containing protei...		Lus10019865 [exp]	22.7	0.8335
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10021059 [exp]	24.7	0.8386
AT3G56870			unknown protein		Lus10018851 [exp]	24.7	0.8323
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	27.3	0.8104

Compare expression of checked genes

Lus10008215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.