Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53520 177 / 2e-56 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G47650 177 / 2e-55 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 177 / 2e-55 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G28760 156 / 2e-48 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 155 / 4e-48 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 155 / 4e-48 UXS5 UDP-XYL synthase 5 (.1.2) AT3G14790 38 / 0.0003 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 38 / 0.0004 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT1G78570 37 / 0.0007 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003605 [exp] 181 / 9e-57 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10030368 [exp] 179 / 2e-56 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10025293 [exp] 177 / 9e-56 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10006510 [exp] 177 / 1e-55 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 177 / 1e-55 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10015038 [exp] 176 / 3e-55 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10001705 [exp] 156 / 4e-49 AT2G28760 501 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005155 [exp] 156 / 2e-48 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005450 [exp] 156 / 2e-48 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129200 [exp] 181 / 5e-57 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G204400 [exp] 180 / 2e-56 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 176 / 3e-55 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 171 / 2e-53 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.010G207200 [exp] 155 / 5e-48 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 155 / 6e-48 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.008G053100 [exp] 155 / 7e-48 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.006G272700 [exp] 45 / 1e-06 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 37 / 0.0006 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 37 / 0.0006 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10008216 pacid=23164930 polypeptide=Lus10008216 locus=Lus10008216.g ID=Lus10008216.BGIv1.0 annot-version=v1.0 ATGCTCGGCCTGGCCAAGCGTGTCGGAGCAAGGTTCTTGCTCACCAGTACCAGCGAGGTCTACGGTGACCCGCTCCAGCATCCCCAGGTTGAGACCTACT GGGGCAACGTCAATCCCATTGAGGAAGGGAAGAGGACAGCGGAGACGCTGGCAATGGATTATCACAGGGGAGCCGGAGTTGAGGTGAGGATTGCAAGAAT CTTCAATACATATGGCCCCAGAATGTGCATTGATGATGGACGGGTGGTCAGTAATTTCGTTGCTCAGGTAACTAACTAA
AA sequence Show only first row Show all	>Lus10008216 pacid=23164930 polypeptide=Lus10008216 locus=Lus10008216.g ID=Lus10008216.BGIv1.0 annot-version=v1.0 MLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIEEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCIDDGRVVSNFVAQVTN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008216 [exp]	0	1
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008217 [exp]	2.8	0.8580
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	9.5	0.8281
AT1G12420		ACR8	ACT domain repeat 8 (.1)		Lus10007004 [exp]	9.8	0.7950
AT3G08500	MYB	ATMYB83	myb domain protein 83 (.1)		Lus10016413 [exp]	13.4	0.8040
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10003549 [exp]	18.4	0.7661
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10030479 [exp]	19.5	0.8055
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10000995 [exp]	24.4	0.7850
AT3G06035			Glycoprotein membrane precurso...		Lus10034054 [exp]	26.9	0.8160
AT5G42200			RING/U-box superfamily protein...		Lus10017253 [exp]	27.1	0.7338
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006570 [exp]	31.5	0.7746

Compare expression of checked genes

Lus10008216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.