Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47650 183 / 7e-56 UXS4 UDP-xylose synthase 4 (.1.2) AT3G62830 180 / 6e-55 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G53520 141 / 8e-41 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT5G59290 93 / 2e-22 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G46440 92 / 4e-22 UXS5 UDP-XYL synthase 5 (.1.2) AT2G28760 91 / 1e-21 UXS6 UDP-XYL synthase 6 (.1.2.3) AT4G23920 44 / 3e-05 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT4G00110 44 / 5e-05 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT1G02000 43 / 5e-05 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT2G45310 43 / 7e-05 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003605 [exp] 330 / 6e-113 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10007874 [exp] 216 / 2e-70 AT3G62830 365 / 1e-125 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10030368 [exp] 212 / 6e-67 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024436 [exp] 145 / 1e-41 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10025293 [exp] 145 / 2e-41 AT3G53520 715 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10037499 [exp] 139 / 3e-39 AT3G62830 551 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006510 [exp] 138 / 7e-39 AT3G62830 637 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10015038 [exp] 137 / 1e-38 AT3G53520 720 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Lus10005900 [exp] 96 / 1e-23 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G204400 [exp] 198 / 8e-62 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 195 / 1e-60 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.016G080500 [exp] 145 / 2e-41 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 137 / 2e-38 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.008G053100 [exp] 94 / 5e-23 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.010G207200 [exp] 94 / 7e-23 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 94 / 1e-22 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.018G100400 [exp] 47 / 2e-06 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G146500 [exp] 46 / 6e-06 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 45 / 9e-06 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01370 [flax] [poplar] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Lus10008217 pacid=23164925 polypeptide=Lus10008217 locus=Lus10008217.g ID=Lus10008217.BGIv1.0 annot-version=v1.0 ATGGCATCGGAGCTAACATTCAGAGGCCAAACCGAGGCTCAACCAGCAGCCGAATCTCACTCCACGAAGCCGTCTCCTCCTCATCCTCAGCAATGGATGT CTCCTATCCTCCGTCCGATTCACTACATCCTCCGTGAGCAGCGCCTGCTCTGCGTCCTTGCCGGCATTACCATAGCCGCCGCCATCTTCAGCCTCCTCCC GTCTGGCGACCGCCGCCACCAGCTCAGCAAGTACGACTTCGATCACGAGCAGATCACCACTACATTCAGGTCTGAATCTCACCACAGCCACCACTCGGCG GCACTGGCGGCGGTGGCTGACGCCCTGGCGCCGATGGAGTCGGGTATCAGAGTCTCCGGGAGGATCCCGCTAGGGTTGAAAAGGAAACCGATGAGGATCG TCGTGACTGGAGGGGCCGGATTCGTGGGATCGCATCTGGTTGACAGGCTGATGGAGAGAGGCGACAGCGTTATAGTGGTGGACAATTTCTTCACGGGGAG GAAAGAGAACGTGATGCACCATTTCAAGAACCCTAGGTTCGAGATGATCCGGCACGATGTCGTTGAGCCGCTGCTGCTTGAGGTCTGTGTTGCTGGAGGT TGA
AA sequence Show only first row Show all	>Lus10008217 pacid=23164925 polypeptide=Lus10008217 locus=Lus10008217.g ID=Lus10008217.BGIv1.0 annot-version=v1.0 MASELTFRGQTEAQPAAESHSTKPSPPHPQQWMSPILRPIHYILREQRLLCVLAGITIAAAIFSLLPSGDRRHQLSKYDFDHEQITTTFRSESHHSHHSA ALAAVADALAPMESGIRVSGRIPLGLKRKPMRIVVTGGAGFVGSHLVDRLMERGDSVIVVDNFFTGRKENVMHHFKNPRFEMIRHDVVEPLLLEVCVAGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008217 [exp]	0	1
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008216 [exp]	2.8	0.8580
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	3.6	0.9106
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	4.0	0.9074
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	8.0	0.8774
AT5G19760			Mitochondrial substrate carrie...		Lus10030361 [exp]	8.4	0.8605
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	9.3	0.8852
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10036756 [exp]	12.0	0.8296
AT5G52180			unknown protein		Lus10031574 [exp]	15.9	0.8561
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	15.9	0.8641
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	17.3	0.8679

Compare expression of checked genes

Lus10008217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.