Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02840 199 / 7e-62 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT4G02430 191 / 4e-60 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G09140 184 / 1e-56 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT3G49430 173 / 8e-52 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT2G24590 62 / 4e-11 RSZ22a, At-RSZ22a RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT4G31580 61 / 7e-11 SRZ22, RSZP22, SRZ-22, RSZ22, At-RSZ22 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) AT4G25500 62 / 1e-10 ATRSP40, AT-SRP40, ATRSP35, RS40, At-RS40 ARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35, arginine/serine-rich splicing factor 40, arginine/serine-rich splicing factor 35 (.1.2.3.4) AT3G61860 61 / 1e-10 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37340 61 / 2e-10 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 61 / 2e-10 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003606 [exp] 231 / 1e-74 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10007869 [exp] 225 / 3e-72 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10020656 [exp] 193 / 1e-58 AT1G02840 297 / 2e-100 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10029885 [exp] 192 / 2e-57 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10015564 [exp] 179 / 2e-54 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10032940 [exp] 179 / 1e-53 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10030374 [exp] 99 / 2e-24 AT1G02840 147 / 8e-45 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10026925 [exp] 65 / 3e-12 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10020123 [exp] 64 / 4e-12 AT4G31580 188 / 2e-61 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G129900 [exp] 211 / 2e-66 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G205025 [exp] 210 / 4e-66 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.013G015500 [exp] 193 / 2e-59 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.005G024600 [exp] 183 / 1e-55 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.015G004600 [exp] 179 / 1e-54 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.012G021800 [exp] 176 / 5e-53 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.016G081700 [exp] 67 / 2e-12 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.006G215200 [exp] 65 / 9e-12 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.019G050600 [exp] 63 / 1e-11 AT1G23860 131 / 3e-39 RS-containing zinc finger protein 21 (.1.2.3.4) Potri.018G009100 [exp] 63 / 2e-11 AT4G31580 174 / 2e-55 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10008218 pacid=23164903 polypeptide=Lus10008218 locus=Lus10008218.g ID=Lus10008218.BGIv1.0 annot-version=v1.0 ATGAGTAGCCGCGCCAGCAGGACTATCTATGTCGGAAATCTACCTGGAGATATTCGAGAGAGGGAAGTGGAAGATTTGTTCTACAAGTATGGACATATAG CTCACATGGATTTGAAGATTCCGCCAAGGCCCCCAGGCTATGCTTTTGTTGAGTTTGAAGATGCTCGTGATGCTGAAGATGCTATTCGTGGTCGTGATGG GTACGACTTTGATGGGCATCGCTTGCGGGTCGAACTTGCACATGGGGGCCGTGGAAATTCTTCCTCTGATCGCTACAGTAGTCATGGTGGTGGCGGTCGT GGTGGTGGTGGTGGTGGTCGTGGTCATGGGGTATCTAAACGATCTGAATATCGTGTTTTGGTCACTGGCTTACCTTCTTCTGCTTCGTGGCAAGACCTGA AGGATCACATGAGACGAGCAGGAGATGTCTGCTTCTCCCAGCTTGGGGGGCGTGGAAATTCTTCCTCTGTTCGCTACAGTAGTCATGGTGGTGGCGGTCG TGGTGGTGGTGGTGGTGGTCGTGGTCATGGAGTATCTAAACGATCTGAATATCGTGTTTTGGTCACTGGCTTACCTTCTTCTGCTTCGTGGCAAGACCTG AAGGATCACATGAGACGAGCAGGAGATGTCTGCTTCTCCCAGGTGTTCCGTGATGACAATGGAACCACCGGGATTGTAGATTATACAAATTATGAAGACC TGAAATACGCTATCAAGAAACTTGATGATTCAGAGTTCCGAAATGCCTTTTCACGGGCATATGTTCGGGTGAAGGAGTATGATTCAAAGAGAGACGACTC TAGGAGTCCTAGTCGTGGAAGATCTCGTTCAAGAGGTCCCAGCCGAAGCCGCAGCCGCAGCCGTAGCCGTGCTCGCAGTTTGAGTCGAAGTAGGAGCTTA AGCAAGTCTCCTAAGAATAAAGGCGCCCGTCAATCCCCTGCAAGATCTCCCGCGAGAGCTCGGTCTAAATCTGTCTCTCGCTCAAGGTCACCCTCTTTGT CCAGGTGA
AA sequence Show only first row Show all	>Lus10008218 pacid=23164903 polypeptide=Lus10008218 locus=Lus10008218.g ID=Lus10008218.BGIv1.0 annot-version=v1.0 MSSRASRTIYVGNLPGDIREREVEDLFYKYGHIAHMDLKIPPRPPGYAFVEFEDARDAEDAIRGRDGYDFDGHRLRVELAHGGRGNSSSDRYSSHGGGGR GGGGGGRGHGVSKRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQLGGRGNSSSVRYSSHGGGGRGGGGGGRGHGVSKRSEYRVLVTGLPSSASWQDL KDHMRRAGDVCFSQVFRDDNGTTGIVDYTNYEDLKYAIKKLDDSEFRNAFSRAYVRVKEYDSKRDDSRSPSRGRSRSRGPSRSRSRSRSRARSLSRSRSL SKSPKNKGARQSPARSPARARSKSVSRSRSPSLSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	0	1
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10003606 [exp]	1.0	0.8817
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	2.4	0.8587
AT4G34412			unknown protein		Lus10019861 [exp]	3.2	0.8246
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	3.2	0.8727
AT5G66320	GATA	GATA5	GATA transcription factor 5 (....		Lus10041810 [exp]	5.3	0.8035
AT5G52030			TraB family protein (.1.2)		Lus10015005 [exp]	6.9	0.8078
AT4G22320			unknown protein		Lus10032566 [exp]	7.3	0.8339
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	8.1	0.8082
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	8.5	0.8150
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	10.6	0.8181

Compare expression of checked genes

Lus10008218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.